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. Author manuscript; available in PMC: 2014 Dec 11.
Published in final edited form as: Exp Eye Res. 2013 Aug 24;116:63–74. doi: 10.1016/j.exer.2013.08.003

Table 3.

Top 5 genetic networks in the retina of the Vldlr−/− mouse (↑ up- and ↓down-regulation)

Network Genes Score Focus genes Functions
1 ↑Fgf1, ↑Fgf3, ↑Fgf6, ↑Fgf7, ↓Fgf8, ↑Fgf9,
↑Fgf10, ↑Fgf11, ↓Fgf12, ↑Fgf13, ↑Fgf14, ↑Fgf16,
↑Fgf17, ↑Fgf18, ↑Fgf20, ↑Fgf21, ↑Fgf22, ↑Fgf23,
↑Figf, ↑Nrg3, ↑Nrg4, ↑Pdgfc, ↑Vegfb
52 23 Cell-to-cell signaling and
interactions, tissue
development, cardiovascular
system development and
function
2 ↓Ctf1, ↑Efna1, ↑Efna2, ↑Efna3, ↑Efna4, ↑Efna5,
↑Fgf5, ↓Ifnk, ↑Il19, ↑IL24, ↑IL12a, ↑IL12b,
↑IL23a, ↑Ntf3, ↑Tslp, ↓Vegfc
32 16 Cellular assembly and
organization, nervous system
development and function,
gastrointestinal disease
3 ↓Il5, ↑Il7, ↓Il10, ↓Il11, ↓Il13, ↑Il15↑Il20, ↑Lif,
↑Osm, ↓Tpo
18 10 Cell-to-cell signaling and
interaction, cellular growth
and proliferation,
hematological system
development and function
4 ↓Angpt4, ↓Csf3, ↑Efnb1, ↑Efnb3, ↑Epo, ↑Hgf,
↓Il2, ↑I13, ↑Lep
19 9 Cell-to-cell signaling and
interaction, cellular growth
and proliferation,
hematological system
development and function
5 ↑Angpt1, ↑Angpt2, ↑Csf1, ↑Efnb2, ↑Fgf2, ↑Gas6,
↑Pdgfd, ↑Vegfa
13 8 Cardiovascular system
development and function,
cellular growth and
proliferation, embryonic
development
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