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. 2014 Jul 28;21(6):585–602. doi: 10.1093/dnares/dsu021

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© The Author 2014. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 5. — Comparative proteome analysis of A. hypochondriacus, V. vinifera and S. lycopersicum. The pie chart shows the source of evidence for proteins from the assembled transcriptome and genome. 17,770 proteins find evidence in both homology and presence in the transcriptome, 3,880 are ab initio predicted with presence in the transcriptome, and 3,179 are those with only evidence from homology to known plant proteins. The Venn diagram compares the total numbers of A. thaliana genes that are orthologous to the respective genomic scaffolds of A. hypochondriacus, V. vinifera and S. lycopersicum with 14,590 proteins common to all the three species representing three major clades under dicots. This figure appears in colour in the online version of DNA Research.