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. 2014 Jul 28;21(6):585–602. doi: 10.1093/dnares/dsu021

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© The Author 2014. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 7. — A genome duplication study in A. thaliana, G. max, V. vinifera, S. lycopersicum, A. hypochondriacus, B. vulgaris, O. sativa, S. bicolor, and Z. mays by comparison of the distribution of percentage identities among paralogous pairs from the respective proteomes. The GENSCAN-predicted proteome of S. lycopersicum is labelled as S. lycopersicum (G) in the figure. The Kernel density plot of the density function of the number of paralogous pairs against the percentage identities for the diverse sequenced plant species shows the first peak at 20–40% identity corresponding to the paleaohexaploidy event and the sharp peak at 90–100% identity representing a recent whole genome duplication event. From the plot, it is evident that A. hypochondriacus, like B. vulgaris, did not undergo any recent whole genome duplication.