Table 1.
Summary of statistics of genome and transcriptome assembly
| Assembled ‘ome | Genome | Genome | Transcriptome |
|---|---|---|---|
| Types of reads assembled | Paired end (PE) | PE and mate pair (MP) | PE |
| Read length (bases) | 75 | PE: 75 MP: 36 |
72 |
| Total number of high-quality reads sequenced | 465,246,312 | PE: 465,246,312 MP: 403,867,096 |
119,875,998 |
| Total number of bases sequenced (in high-quality reads) | 34,893,473,400 | 49,432,688,856 | 8,631,071,856 |
| Total number of bases in the assembly (% of genome) | 315,828,977 (63.2%) | 645,211,960 (>100%) | 136,933,803 (29.26%) |
| Number of A, T, G, and C in the assembly (% of genome) | 276,891,658 (58.9%) | 273,809,695 (58.3%) | 136,933,803 (29.26%) |
| G+C base content (% of the ‘ome) | 91,893,918 (19.63%) | 90,943,537 (19.43%) | 52,037,597 (38%) |
| Total number of assembled sequences | 491,569 | 367,441 | 57,658 |
| Longest sequence assembled (bases) | 24,878 | 485,353 | 17,471 |
| N50/NG50 (bases) | 1,884/648 | 35,089/50,869 | 3,279/– |
| Number of sequences above N50/NG50 | 42,507/111,228 | 4,897/2,826 | 15,134/– |