Table 2.
Comparative repeat element analysis using both A. thaliana repeats and predicted repeats
| Ah | Bv | Sla | Sl | Vv | At | Sb | Os | |
|---|---|---|---|---|---|---|---|---|
| Genome size (Mb) | 466 | 760 | 2,800 | 950 | 475 | 157 | 698 | 430 |
| LTR | 0.69% | 4.60% | 4.41% | 6.68% | 4.87% | 6.66% | 4.49% | 2.08% |
| Gypsy | 0.23% | 2.07% | 3.50% | 4.28% | 3.38% | 5.15% | 3.36% | 1.35% |
| Copia | 0.45% | 2.51% | 0.88% | 2.40% | 1.49% | 1.44% | 1.11% | 0.71% |
| LINE | 0.07% | 0.50% | 0.00% | 0.03% | 0.11% | 1.01% | 0.04% | 0.03% |
| L1 | 0.07% | 0.50% | 0.00% | 0.03% | 0.11% | 1.00% | 0.04% | 0.03% |
| Total genome masked using Repbase with A. thaliana as the template | 1.70% | 6.25% | 7.18% | 7.14% | 5.30% | 14.90% | 4.95% | 2.74% |
| Total genome masked using RepeatScout predicted repeats from respective genomes | 7.47 | 69.86 | NA | 68.34 | 55.02 | 18.43 | 68.67 | 47.69 |
The species used for comparison are—Ah: A. hypochondriacus; Bv: B. vulgaris (USDA version); Sla: Silene latifolia;58 Sl: S. lycopersicum; Vv: V. vinifera; At: A. thaliana; Sb: S. bicolor; Os: O. sativa.