Table 2.
Repeat classification | Element number | Length occupied (bp) | Percentage of sequence |
---|---|---|---|
Retroelements (Class I TE) | 35,453 | 13,617,164 | 3.53 |
SINEs | 4,624 | 682,986 | 0.18 |
Penelope | 2,472 | 584,662 | 0.15 |
LINEs | 25,330 | 10,437,024 | 2.71 |
L2/CR1/Rex | 16,149 | 6,329,913 | 1.64 |
R2/R4/NeSL | 1,448 | 698,863 | 0.18 |
RTE/Bov-B | 3,644 | 1,909,961 | 0.50 |
L1/CIN4 | 851 | 392,390 | 0.10 |
LTR elements | 5,499 | 2,497,154 | 0.65 |
BEL/Pao | 84 | 54,053 | 0.01 |
Ty1/Copia | 93 | 62,584 | 0.02 |
Gypsy/DIRS1 | 3,811 | 1,780,914 | 0.46 |
Retroviral | 1,152 | 485,775 | 0.13 |
DNA transposons (Class II TE) | 12,414 | 4,024,945 | 1.04 |
hobo-activator | 3,856 | 1,056,562 | 0.27 |
Tc1-IS630-Pogo | 6,383 | 2,277,388 | 0.59 |
MuDR-IS905 | 51 | 19,538 | 0.01 |
PiggyBac | 209 | 47,311 | 0.01 |
Tourist/Harbinger | 1,286 | 505,502 | 0.13 |
Unclassified | 5,792 | 887,474 | 0.23 |
Satellites | 132 | 45,255 | 0.01 |
Simple repeats | 100,212 | 6,348,631 | 1.65 |
Low complexity | 30,479 | 1,536,650 | 0.40 |