Table 2.
Repetitive sequences in the genome sequences of T. flavidus
| Repeat classification | Element number | Length occupied (bp) | Percentage of sequence |
|---|---|---|---|
| Retroelements (Class I TE) | 35,453 | 13,617,164 | 3.53 |
| SINEs | 4,624 | 682,986 | 0.18 |
| Penelope | 2,472 | 584,662 | 0.15 |
| LINEs | 25,330 | 10,437,024 | 2.71 |
| L2/CR1/Rex | 16,149 | 6,329,913 | 1.64 |
| R2/R4/NeSL | 1,448 | 698,863 | 0.18 |
| RTE/Bov-B | 3,644 | 1,909,961 | 0.50 |
| L1/CIN4 | 851 | 392,390 | 0.10 |
| LTR elements | 5,499 | 2,497,154 | 0.65 |
| BEL/Pao | 84 | 54,053 | 0.01 |
| Ty1/Copia | 93 | 62,584 | 0.02 |
| Gypsy/DIRS1 | 3,811 | 1,780,914 | 0.46 |
| Retroviral | 1,152 | 485,775 | 0.13 |
| DNA transposons (Class II TE) | 12,414 | 4,024,945 | 1.04 |
| hobo-activator | 3,856 | 1,056,562 | 0.27 |
| Tc1-IS630-Pogo | 6,383 | 2,277,388 | 0.59 |
| MuDR-IS905 | 51 | 19,538 | 0.01 |
| PiggyBac | 209 | 47,311 | 0.01 |
| Tourist/Harbinger | 1,286 | 505,502 | 0.13 |
| Unclassified | 5,792 | 887,474 | 0.23 |
| Satellites | 132 | 45,255 | 0.01 |
| Simple repeats | 100,212 | 6,348,631 | 1.65 |
| Low complexity | 30,479 | 1,536,650 | 0.40 |