Table 1. Summary of the nucleotide sequence data for EgPSCs prior to and following assembly, with detailed bioinformatic annotation and analyses.
Raw reads | 330188 |
Unigenes (average length; min-max length) | 26514 (510.5; 150–3357) |
Containing an open reading frame (%) | 19576 (73.8) |
With homologues in E. granulosus (%) | 17732 (66.9) |
E. multilocularis | 17861 (67.4) |
Caenorhabditis elegans | 8946(33.7) |
Clonorchis sinensis | 2540 (20.6) |
Schistosoma mansoni | 2159 (17.5) |
Schistosoma japonicum | 1485 (12.1) |
Escherichia coli | 159 (1.3) |
Returning STRING results (%) | 3188 (12.0) |
Returning NCBI NR results (%) | 12408 (46.8) |
Gene Ontology (%) | 5846 (22.0) |
Number of biological process terms (level 2) | 24 |
Cellular component | 20 |
Molecular function | 14 |
Returning a KOBAS result (%) | 5657 (21.3) |
Number of predicted biological pathways | 306 |