Figure 1.

Phylogenomic analyses of selectedMycobacterium tuberculosis complex (MTBC) clinical isolates. Maximum likelihood phylogeny of 35 MTBC strains used for this study based on single-nucleotide polymorphisms (SNPs) extracted from (A) full genome data (e.g. 2795 synonymous SNPs) and (B) polymorphisms in genes related to the mycolic acid pathway (e.g. 98 nonsynonymous SNPs). Bootstrap values indicating node support are indicated. Four lineages of M. tuberculosis strains affecting humans are represented and highlighted with the same color code across the study.