Table 3.
Bacterial species which DNA was detected in the bile and gall bladder mucus samples
| Species | Sample |
|||||
|---|---|---|---|---|---|---|
| B 2 | B 3 | M3 | B 4 | M4 | B 5 | |
| Bacillus pumilus | 4.81 | – | 0.03 | – | 0.02 | – |
| Bacillus sp. | 32.88 | 0.01 | 0.47 | – | 0.51 | 0.01 |
| Bifidobacterium breve | 0.22 | – | – | – | – | – |
| Bifidobacterium sp. | 0.11 | – | – | 0.01 | 0.02 | – |
| Bradyrhizobium japonicum | 0.16 | – | – | – | 0.02 | 0.02 |
| Bradyrhizobium sp. | 0.36 | – | – | – | 0.02 | – |
| Chicken intestinal bacterium | 0.16 | – | – | 0.04 | – | 7.63 |
| Clostridia bacterium | 0.06 | 0.06 | 0.01 | 0.03 | 0.13 | 0.10 |
| Corynebacterium auriscanis | 0.13 | – | 0.06 | – | – | 0.02 |
| Corynebacterium canis | 10.40 | – | 0.17 | – | 0.36 | – |
| Corynebacterium felinum | 1.74 | – | 0.04 | – | 0.04 | – |
| Corynebacterium sp. | 0.07 | – | – | 0.02 | – | 0.18 |
| Firmicutes bacterium | 0.02 | 0.03 | 0.01 | 0.02 | 0.11 | 0.03 |
| Haemophilus sp. | – | 0.04 | 0.09 | 0.02 | 0.13 | – |
| Klebsiella oxytoca | 0.36 | – | – | – | 0.04 | – |
| Klebsiella sp. | 1.34 | 0.03 | 0.04 | – | – | – |
| Kocuria carniphila | 2.85 | – | 0.06 | – | 0.04 | – |
| Kocuria sp. | 0.23 | – | 0.01 | – | – | – |
| Lactobacillus fermentum | 0.59 | – | – | 0.99 | – | – |
| Lactobacillus paraplantarum | 0.02 | 0.04 | 0.04 | 0.02 | 0.02 | 0.08 |
| Lactobacillus salivarius | 1.77 | – | 0.04 | 0.55 | – | 70.46 |
| Lactobacillus sp. | 0.17 | – | 0.01 | 0.21 | – | 0.01 |
| Lactococcus lactis | 0.58 | – | – | – | – | – |
| Macrococcus sp. | 0.32 | – | – | – | – | – |
| Pseudomonas sp. | 0.12 | 0.08 | – | – | – | – |
| Sphingobacterium sp. | 0.14 | – | – | – | – | – |
| Staphylococcus sp. | 0.17 | – | – | – | – | 0.01 |
| Stenotrophomonas maltophilia | 0.27 | 0.02 | – | – | 0.02 | – |
| Streptococcus alactolyticus | 0.23 | 95.55 | 92.35 | 92.34 | 92.47 | – |
| Streptococcus minor | 0.07 | 0.03 | 0.03 | 0.02 | 0.02 | – |
| Streptococcus pneumoniae | 0.05 | 0.14 | 0.34 | 0.11 | 0.41 | 0.08 |
| Streptococcus salivarius | – | 0.04 | 0.17 | 0.06 | 0.13 | – |
| Streptococcus sp. | 0.06 | 0.15 | 0.66 | 0.14 | 0.47 | – |
| Uncultured bacteria | 34.51 | 3.24 | 5.02 | 4.81 | 4.82 | 20.76 |
| Yokenella regensburgei | 1.60 | 0.02 | 0.01 | – | – | – |
| Others | 3.43 | 0.51 | 0.30 | 0.59 | 0.19 | 0.60 |
The values represent the percentage of the total reads belonging to the different species in each sample. Only those bacterial species that reached, at least, 0.1% of the total reads are displayed. M, gall bladder mucus layer; B, gall bladder biopsy.