Table 5. Non-synonymous mutations in the RT region of Palestinian D1 subgenotypes.
nt position | aa position | Occurrence | Reported function/detected in | Reference |
400:C/A | L91I | 1 | Unknown/patients treated with NRTIs | [68] |
410:A/T | H94I | 1 | Unknown | Novel |
457:A/G | R110G | 2 | Unknown/naïve patients | [69] |
472:T/G | L115V | 1 | Unknown/naïve patients | [70] |
493:T/(A,C,G) | F122I | 15* | Unknown | [71] |
499:T/(C,A) | H124Y | 9* | Unknown | [71] |
533:A/C | Y135S | 35* | Unknown/HIV-positive HBV patient after LVD therapy | [72] |
533:A/T | Y135F | 1 | Unknown | Novel |
538:T/A | S137T | 2 | Unknown | [71] |
562:C/A | L145M | 1 | Unknown/naïve patient | [70] |
586:C/A | R153K | 2 | Proposed to enhance viral polymerase fitness | [72] |
587:G/A | R153Q | 2 | Reduces the replication efficiency of the viral polymerase. | [72] |
784:T/(C,A) | S219P | 2 | Unknown/ETV-treated patients | [69] |
791:T/A | F221Y | 3 | Unknown/naïve patients | [73] |
793:A/T | T222S | 1 | Unknown/ETV-treated patients | [69] |
823:C/A | P237T | 1 | Unknown/naïve patients | [73] |
871:A/C | N248H | 24* | Unknown/HIV-positive HBV patient after LVD therapy | [72] |
895:T/A | C256S | 2 | Unknown | [71] |
918:T/A | D263E | 1 | Unknown | [71] |
926:T/(G,A) | I266K | 3 | Unknown/patients treated with NRTIs | [68] |
950:G/A | R274K | 4* | Unknown/NRTIs–naïve patients | [68] |
965:A/C | N279T | 1 | Unknown | GenBank AB106564 |
1055:T/A | M309K | 2 | Impairs viral polymerase activity | [74] |
Positions of the nucleotide (nt) mutation and the correlating amino acid (aa) are presented based on their location in the archived GenBank reference DQ315778. Occurrence reflects the number of samples (patients) in which the mutation was detected. Corresponding references and proposed functions are provided in the last two columns. Unreported mutations were considered novel. Exchanges marked with (*) are considered polymorphisms due to their prevalence in>10% of the 40 patients. NRTIs: nucleoside and/or nucleotide reverse-transcriptase inhibitors, LVD: Lamivudine, ETV:Entecavir.