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. 2014 Sep 25;64(1):112–126. doi: 10.1093/sysbio/syu080

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© The Author(s) 2014. Published by Oxford University Press, on behalf of the Society of Systematic Biologists.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — Phylogenetic relationships in a young allopolyploid, Nicotiana section Nicotiana (N. tabacum) and related diploid progenitor taxa (Solanaceae). a) Unrooted most parsimonious tree for repeats based on 1000 cluster abundances from 5% genome proportion clustering, maximum parsimony analysis with 10 000 symmetric bootstrap replications and bootstrap percentages plotted onto the single MPT. b) Filtered supernetwork showing relationships present in 10% of the bootstrap trees from a). Numbers on nodes represent $BPs \geq 50$ ; branch lengths are shown from the single MPT. The supernetwork is presented in order to present conflicting splits present due to recent reticulation.