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. 2014 Nov 4;66(1):293–306. doi: 10.1093/jxb/eru419

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© The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 2. — Association mapping result for t-LBS. (A) Frequency distribution of observed t-LBS. (B) QQ plot of expected and observed P values. (C) Manhattan plots from association mapping using the MLM. The top 50 SNPs are shown in blue and the SNPs exceeding the significance threshold of P<0.0001 are shown in red. (D) The peak region on chromosome 1. (E) The peak region on chromosome 5. In (D) and (E), pair-wise LD between SNP markers is indicated as D’ values: dark red indicates a value of 1 and white indicates 0. The dotted squares in (D) and (E) denote the LD blocks that contain significant SNPs. (This figure is available in colour at JXB online.)