Table 1.
Geographic origin and basic information on genetic diversity of 55 population samples of Magnaporthe oryzae
| Area | Country | Sample | N | Hn.b. | Na | Np | MLG | G : N |  |
|---|---|---|---|---|---|---|---|---|---|
| Asia | China | CH1 | 107 | 0.629 | 6.9 | 1.6 | 82 | 77% | 0.069 |
| – | – | CH2 | 38 | 0.522 | 3.4 | 0.2 | 21 | 55% | 0.292 |
| – | – | CH3 | 23 | 0.499 | 3.7 | 0.1 | 11 | 48% | 0.189 |
| – | – | CH4 | 25 | 0.051 | 1.3 | 0 | 4 | 16% | 0.209 |
| – | – | CH5 | 28 | 0.541 | 3.8 | 0 | 19 | 68% | 0.094 |
| – | – | CH6 | 30 | 0.253 | 2.6 | 0 | 7 | 23% | 0.368 |
| – | – | CH7 | 14 | 0.256 | 2.1 | 0 | 9 | 64% | 0.150 |
| – | Indonesia | ID1 | 20 | 0.277 | 2.3 | 0.1 | 10 | 50% | 0.135 |
| – | – | ID2 | 19 | 0.089 | 1.4 | 0.1 | 4 | 21% | 0.095 |
| – | – | ID3 | 16 | 0.114 | 1.7 | 0 | 6 | 38% | 0.053 |
| – | Laos | LA1 | 15 | 0.569 | 3.4 | 0.4 | 12 | 80% | 0.154 |
| – | – | LA2 | 9 | 0.518 | 3.5 | 0.2 | 8 | 89% | 0.073 |
| – | Nepal | NP1 | 31 | 0.168 | 2.6 | 0.1 | 11 | 35% | 0.295 |
| – | – | NP2 | 15 | 0.403 | 2.8 | 0.3 | 6 | 40% | 0.330 |
| – | – | NP3 | 6 | 0.491 | 2.4 | 0.1 | 4 | 67% | 0.651 |
| – | Thailand | TH | 27 | 0.460 | 3.6 | 0.1 | 18 | 67% | 0.166 |
| Europe/MB | France | FR1 | 23 | 0.124 | 1.7 | 0 | 9 | 39% | 0.050 |
| – | – | FR2 | 17 | 0.163 | 1.9 | 0 | 9 | 53% | −0.010 |
| – | – | FR3 | 18 | 0.112 | 1.6 | 0 | 6 | 33% | 0.113 |
| – | – | FR4 | 17 | 0.110 | 1.6 | 0 | 8 | 47% | 0.009 |
| – | – | FR5 | 22 | 0.019 | 1.2 | 0.1 | 3 | 14% | nd |
| – | – | FR6 | 37 | 0.317 | 2.3 | 0.1 | 8 | 22% | 0.398 |
| – | – | FR7 | 15 | 0.024 | 1.1 | 0 | 2 | 13% | nd |
| – | Greece | GR1 | 10 | 0.246 | 1.7 | 0 | 6 | 60% | 0.261 |
| – | – | GR2 | 10 | 0.183 | 1.8 | 0 | 6 | 60% | 0.144 |
| – | – | GR3 | 10 | 0.225 | 1.7 | 0 | 4 | 40% | 0.456 |
| – | – | GR4 | 9 | 0.102 | 1.5 | 0 | 3 | 33% | nd |
| – | – | GR5 | 9 | 0.167 | 1.6 | 0 | 3 | 33% | nd |
| – | – | GR6 | 10 | 0.190 | 2 | 0 | 4 | 40% | 0.544 |
| – | – | GR7 | 9 | 0.115 | 1.3 | 0 | 3 | 33% | nd |
| – | Hungary | HN1 | 7 | 0.070 | 1.2 | 0 | 3 | 43% | nd |
| – | – | HN2 | 3 | 0.053 | 1.1 | 0 | 2 | 67% | nd |
| – | – | HN3 | 7 | 0.101 | 1.3 | 0 | 4 | 57% | −0.055 |
| – | Morocco | MC | 15 | 0.169 | 1.9 | 0.1 | 8 | 53% | 0.097 |
| – | Spain | SP1 | 12 | 0.260 | 2 | 0 | 6 | 50% | 0.344 |
| – | – | SP2 | 31 | 0.204 | 2.1 | 0 | 11 | 35% | 0.245 |
| – | – | SP3 | 11 | 0.258 | 1.7 | 0 | 5 | 45% | 0.545 |
| – | – | SP4 | 22 | 0.278 | 2.1 | 0 | 9 | 41% | 0.399 |
| – | – | SP5 | 13 | 0.039 | 1.2 | 0 | 3 | 23% | nd |
| – | – | SP6 | 9 | 0.052 | 1.1 | 0 | 2 | 22% | nd |
| – | – | SP7 | 10 | 0.044 | 1.1 | 0 | 2 | 20% | nd |
| – | – | SP8 | 18 | 0.052 | 1.1 | 0 | 2 | 11% | nd |
| – | – | SP9 | 29 | 0.057 | 1.3 | 0.1 | 4 | 14% | −0.046 |
| – | Turkey | TR | 19 | 0.048 | 1.3 | 0 | 4 | 21% | −0.079 |
| Americas | Colombia | CL1 | 17 | 0.083 | 1.4 | 0 | 2 | 12% | nd |
| – | – | CL2 | 31 | 0.052 | 1.4 | 0.1 | 5 | 16% | −0.057 |
| – | French Guyana | GY | 12 | 0.219 | 1.9 | 0.2 | 3 | 25% | nd |
| – | USA | USA1 | 37 | 0.558 | 3.2 | 0.1 | 14 | 38% | 0.469 |
| – | – | USA2 | 39 | 0.018 | 1.3 | 0 | 3 | 8% | 0.280 |
| Africa | Madagascar | MD1 | 264 | 0.039 | 3.7 | 0.3 | 24 | 9% | 0.191 |
| – | – | MD2 | 27 | 0.169 | 2 | 0 | 10 | 37% | 0.047 |
| – | – | MD3 | 37 | 0.115 | 2.2 | 0 | 12 | 32% | 0.061 |
| – | – | MD4 | 15 | 0.000 | 1 | 0 | 1 | 7% | nd |
| – | – | MD5 | 23 | 0.193 | 2.4 | 0 | 11 | 48% | 0.022 |
| – | – | MD6 | 25 | 0.074 | 1.7 | 0 | 7 | 28% | −0.007 |
The first three columns give the area of origin (MB, Mediterranean Basin), the country of origin, and the name of the samples. N, sample size; Hn.b, unbiased gene diversity; Na, mean number of alleles per locus; Np, mean number of private alleles per locus; G, number of multilocus genotypes (MLG); G : N, proportion of unique MLG; 
, multilocus linkage disequilibrium (
was not calculated (nd) when the number of MLGs was below 4).