Table 3.
Comparative analysis against Sphingomonas spp. against major bacterial virulence factors and functions from different pathogenic bacteria.
| BACTERIAL TAXA | MAJOR BACTERIAL VIRULENCE FACTORS (VFS) | SUB VFS | RELATED GENE | E VALUE | IDENT | Sphingomonas GENBANK ACCESSION |
|---|---|---|---|---|---|---|
| Brucella | Intracellular survival and Immuno-modulatory activity | CβG (cyclic β-1,2 glucan) | cgs | 6.00E-59 | 66% | CP006644.1 |
| Mannose-1-phosphate guanylyltransferase | manC | 3.00E-09 | 77% | NC_009511.1 | ||
| Phosphoglucomutase | pgm | 0 | 74% | NC_009511.1 | ||
| Secretion system | VirB type IV secretion system | BMEII 0025 | 4.00E-04 | 83% | CP006644.1 | |
| VirB type IV secretion system | BMEII 0026 | 6.00E-04 | 90% | NC_020561.1 | ||
| VirB type IV secretion system | BMEII 0035 | 4.00E-06 | 72% | NC_020561.1 | ||
| Legionella | Adherence | Hsp60 | htpB | 2.00E-25 | 64% | NC_020561.1 |
| Motility | Flagella | fliP | 4.00E-11 | 68% | NC_020561.1 | |
| Stress protein | SodB | sodB | 3.00E-05 | 82% | NC_020561.1 | |
| Pseudomonas | Adherence | Flagella | fleQ | 4.00E-65 | 72% | NC_009511.1 |
| flgE | 5.00E-19 | 67% | NC_009511.1 | |||
| flgF | 7.00E-14 | 71% | NC_009511.1 | |||
| flgG | 4.00E-55 | 68% | NC_020561.1 | |||
| flgH | 4.00E-29 | 72% | NC_020561.1 | |||
| flgI | 6.00E-93 | 68% | NC_020561.1 | |||
| flgJ | 6.00E-05 | 89% | NC_020561.1 | |||
| flgK | 1.00E-04 | 94% | NC_009511. | |||
| flhA | 2.00E-141 | 69% | NC_020561.1 | |||
| flhB | 1.00E-18 | 68% | NC_020561.1 | |||
| flhF | 6.00E-05 | 89% | NC_020561.1 | |||
| fliC | 1.00E-32 | 72% | NC_009511.1 | |||
| fliE | 6.00E-04 | 74% | NC_020561.1 | |||
| fliF | 3.00E-04 | 66% | NC_020561.1 | |||
| fliG | 8.00E-15 | 69% | NC_020561.1 | |||
| fliH | 4.00E-05 | 85% | CP006644.1 | |||
| fliI | 1.00E-115 | 71% | NC_009511. | |||
| fliN | 3.00E-16 | 70% | NC_009511.1 | |||
| fliP | 9.00E-102 | 75% | NC_020561. | |||
| fliQ | 2.00E-08 | 84% | NC_020561.1 | |||
| fliR | 7.00E-08 | 72% | NC_020561.1 | |||
| GENUS | MAJOR VFS | SUB VFS | RELATED GENE | E VALUE | IDENT | ACCESSION |
| Pseudomonas | Adherence | LPS (lipopolysaccharide) | waaA | 2.00E-04 | 89% | CP006644.1 |
| waaG | 4.00E-07 | 76% | NC_020561.1 | |||
| waaP | 1.00E-04 | 83% | NC_020561.1 | |||
| Type IV pili | chpA | 7.00E-26 | 67% | NC_020561.1 | ||
| chpC | 8.00E-05 | 82% | NC_020561.1 | |||
| chpE | 3.00E-05 | 86% | CP006644.1 | |||
| fimU | 3.00E-04 | 93% | NC_009511.1 | |||
| pilB | 3.00E-04 | 93% | NC_009511.1 | |||
| pilD | 4.00E-05 | 76% | CP006644.1 | |||
| pilF | 4.00E-05 | 97% | CP006644.1 | |||
| pilG | 2.00E-04 | 80% | NC_020561.1 | |||
| pilH | 2.00E-04 | 77% | NC_009511.1 | |||
| pilI | 7.00E-06 | 84% | CP006644.1 | |||
| pilJ | 5.00E-21 | 76% | NC_020561.1 | |||
| pilK | 3.00E-06 | 83% | NC_020561.1 | |||
| pilN | 8.00E-04 | 82% | CP006644.1 | |||
| pilQ | 1.00E-09 | 73% | NC_009511.1 | |||
| pilR | 9.00E-54 | 70% | NC_009511.1 | |||
| pilS | 6.00E-06 | 74% | NC_020561.1 | |||
| pilT | 1.00E-07 | 83% | NC_009511.1 | |||
| pilU | 1.00E-12 | 75% | NC_009511.1 | |||
| pilV | 2.00E-06 | 72% | CP006644.1 | |||
| pilW | 1.00E-05 | 88% | NC_009511.1 | |||
| Antiphagocytosis | Alginate | Alg 44 | 7.00E-04 | 85% | NC_020561.1 | |
| algA | 1.00E-21 | 65% | NC_009511.1 | |||
| algB | 2.00E-36 | 69% | NC_009511.1 | |||
| algD | 2.00E-23 | 72% | CP006644.1 | |||
| algF | 3.00E-05 | 91% | CP006644.1 | |||
| algG | 8.00E-05 | 85% | CP006644. | |||
| algI | 1.00E-59 | 67% | NC_009511.1 | |||
| algJ | 7.00E-04 | 94% | NC_009511.1 | |||
| algP | 1.00E-07 | 80% | CP006644.1 | |||
| algZ | 5.00E-05 | 91% | CP006644.1 | |||
| Pseudomonas | Biosurfactant | Rhamnolipid | rhlA | 5.00E-04 | 89% | NC_009511.1 |
| Iron uptake | Pyochelin | fptA | 6.00E-08 | 86% | NC_009511.1 | |
| pchA | 8.00E-04 | 93% | NC_009511.1 | |||
| pchB | 6.00E-04 | 67% | NC_020561.1 | |||
| pchC | 1.00E-04 | 80% | NC_009511.1 | |||
| pchD | 1.00E-09 | 67% | NC_009511.1 | |||
| pchE | 5.00E-12 | 94% | CP006644.1 | |||
| pchF | 9.00E-17 | 79% | CP006644.1 | |||
| pchG | 1.00E-05 | 79% | NC_009511.1 | |||
| pchH | 2.00E-12 | 75% | CP006644.1 | |||
| pchI | 3.00E-16 | 74% | NC_020561.1 | |||
| Pyoverdine | fpvA | 3.00E-12 | 68% | NC_020561.1 | ||
| pvdA | 6.00E-05 | 85% | NC_020561.1 | |||
| pvdD | 6.00E-33 | 67% | CP006644.1 | |||
| pvdE | 7.00E-06 | 82% | NC_009511.1 | |||
| Pigment | Pyocyanin | phzM | 5.00E-05 | 77% | NC_009511.1 | |
| Pyocyanin | phzS | 6.00E-05 | 68% | NC_009511.1 | ||
| Protease | Alkaline protease | aprA | 2.00E-12 | 79% | CP006644.1 | |
| LasA | lasA | 2.00E-04 | 86% | NC_020561.1 | ||
| LasB (Elastase) | lasB | 9.00E-04 | 86% | CP006644.1 | ||
| Regulation | Quorum sensing | rhlL | 3.00E-04 | 93% | NC_009511.1 | |
| rhlR | 5.00E-09 | 72% | NC_009511.1 | |||
| Secretion system | xcp secretion system | xcpQ | 2.00E-46 | 70% | NC_009511.1 | |
| xcpR | 3.00E-174 | 72% | NC_009511.1 | |||
| xcpS | 1.00E-44 | 66% | NC_009511.1 | |||
| xcpT | 3.00E-23 | 69% | NC_009511.1 | |||
| xcpU | 2.00E-07 | 78% | NC_020561.1 | |||
| xcpW | 4.00E-04 | 73% | NC_009511.1 | |||
| xcpX | 1.00E-05 | 88% | NC_020561.1 | |||
| Toxin | PLC (Phospholipase C) | plcH | 6.00E-33 | 68% | CP006644.1 |