Table 2.
Differentially expressed genes involved in protein metabolism in the muscle of crisp grass carp and grass carp.
| Gene name | Affy-ID | Fold change |
|---|---|---|
| Collagen | ||
| Collagen, type I, alpha-2 | DrAffx.2.1.S1_s_at | 5.049230 |
| Collagen, type I, alpha-1 | Dr.1377.1.A1_at | 4.646780 |
| Collagen type II, alpha-1a | Dr.3761.1.S1_at | 4.283097 |
| si:ch211-106n13.3 | Dr.1276.1.A1_at | 1.825742 |
| Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide-2; hypothetical protein LOC100151456 |
Dr.19144.1.A1_at | 0.253430 |
| C1q and tumor necrosis factor related protein-5 | Dr.965.1.S1_at | 0.212245 |
| Proteolysis | ||
| Ubiquitin specific protease-16 | Dr.21873.1.A1_at | 4.844206 |
| Phosphate regulating gene with homologues to endopeptidases on the X chromosome | Dr.25529.1.S1_at | 1.544958 |
| Ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) | Dr.23793.1.A1_at | 0.581777 |
| zgc:123295 | Dr.18631.1.S1_at | 0.502692 |
| zgc:92791; hypothetical LOC797742 | Dr.15777.1.A1_at | 0.396054 |
| Carboxypeptidase-A5 | Dr.4882.1.S1_at | 0.333607 |
| Speckle-type POZ protein | Dr.12893.1.S1_at | 0.202174 |
| Six-cysteine containing astacin protease 1 | Dr.21939.1.A1_at | 0.201674 |
| Janus kinase-1 | Dr.18349.1.A1_at | 0.188976 |
| Protein transport | ||
| zgc:92303 | Dr.4306.1.A1_at | 12.18947 |
| zgc:77724 | Dr.14413.1.A1_at | 4.213999 |
| KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2, like | Dr.1198.1.A1_at | 2.799246 |
| Clathrin, light chain (Lca) | Dr.26380.1.A1_at | 1.98067 |
| Translocase of inner mitochondrial membrane 17 homolog A (yeast) | Dr.3096.1.A1_at | 1.92503 |
| Importin-7 | Dr.19552.1.S1_at | 0.523015 |
| Adaptor-related protein complex 1, sigma 1 subunit | Dr.18735.1.A1_at | 0.409458 |
| Similar to peroxisome biogenesis factor 13; peroxisome biogenesis factor 13 | Dr.6902.1.S1_at | 0.321697 |
| Chromatin modifying protein 4B | Dr.16859.1.S1_at | 0.274372 |
| Regulation of cellular protein metabolic process | ||
| Eukaryotic translation initiation factor-5A | Dr.20010.3.S2_at | 3.296618 |
| Neuroguidin, EIF4E binding protein | Dr.20137.1.S1_at | 2.291049 |
| Axin 1 | Dr.17733.1.S1_at | 0.505078 |
| MAP kinase-interacting serine/threonine kinase 2b | Dr.17570.1.S3_at | 0.449659 |
| Glycoprotein | ||
| Rhesus blood group, B glycoprotein | Dr.9532.1.S1_at | 8.115116 |
| Stromal cell-derived factor-4 | Dr.20092.1.S1_at | 4.935459 |
| Acetylcholinesterase | Dr.15722.1.S1_at | 4.445239 |
| Melatonin receptor type 1B a | Dr.20978.1.S1_at | 3.767983 |
| Semaphorin 3ab | Dr.8112.1.S1_at | 3.37293 |
| Myelocytomatosis oncogene b | Dr.16048.1.S1_at | 3.10492 |
| zgc:123242 | Dr.13408.1.S1_at | 2.546485 |
| Ephrin-A2 | Dr.20957.2.A1_at | 1.785163 |
| Fibroblast growth factor receptor-4 | Dr.409.1.S1_at | 1.746774 |
| Opsin 1 (cone pigments), long-wave-sensitive, 1 | Dr.131175-1_s_at | 0.379971 |
| Transmembrane protein-192 | Dr.17388.2.S1_at | 0.214102 |
Fold change = (signal intensity of a gene in the muscle of crisp grass carp)/(signal intensity of the gene in the muscle of grass carp).