Table 5.
Differentially expressed genes involved in metal ions and vitamin metabolism in the muscle of crisp grass carp and grass carp.
| Gene name | Affy-ID | Fold change |
|---|---|---|
| Calcium | ||
| Rhomboid, veinlet-like 3 (Drosophila); hypothetical LOC100005244 | Dr.25770.2.A1_at | 6.680544 |
| Stromal cell-derived factor-4 | Dr.20092.1.S1_at | 4.935459 |
| Protocadherin-10a | Dr.21790.1.A1_at | 4.905736 |
| Calreticulin | Dr.25177.1.S1_at | 3.450125 |
| zgc:123242 | Dr.13408.1.S1_at | 2.546485 |
| Parvalbumin-3 | Dr.15359.1.S1_at | 1.997458 |
| Calmodulin 2b, /// calmodulin 3b /// calmodulin 3a /// calmodulin 2a /// calmodulin 1b /// zgc:55813 /// calmodulin 1a |
Dr.7638.1.S1_at | 1.549420 |
| zgc:136759 | Dr.19975.1.S1_at | 0.336455 |
| Guanylate cyclase activator 1-A | Dr.12592.1.S1_at | 0.30074 |
| Desmocollin 2-like | Dr.934.1.A1_at | 0.23301 |
| Iron ion binding | ||
| zgc:92245; hypothetical LOC792323 | Dr.20662.1.A1_at | 4.470659 |
| Transferrin-a; Rho-class glutathione S-transferase | Dr.1889.1.S1_at | 3.685072 |
| Cytochrome P450, family 26, subfamily b, polypeptide-1 | Dr.180.1.A1_at | 3.092533 |
| Cytochrome c oxidase, subunit VIIc | Dr.7444.1.S1_at | 2.380282 |
| Cytochrome c oxidase subunit 1 | Dr.20553.2.A1_at | 2.223735 |
| Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2; hypothetical protein LOC100151456 |
Dr.19144.1.A1_at | 0.25343 |
| Zinc ion binding | ||
| Similar to zinc finger protein-135 (zinc finger protein 61) (zinc finger protein 78-like 1); zgc:174288; zgc:110249 |
Dr.11066.2.A1_a_at | 13.94189 |
| si:ch211-222k6.1; si:ch211-222k6.2; zgc:174564 | Dr.23520.1.A1_at | 12.04316 |
| Similar to COASTER | Dr.14346.2.A1_x_at | 11.16127 |
| zgc:174263 | Dr.15456.1.A1_at | 6.072371 |
| Muscleblind-like (Drosophila); hypothetical protein LOC100150760; hypothetical protein LOC100150761 |
Dr.25973.1.A1_at | 6.004707 |
| Ubiquitin specific protease-16 | Dr.21873.1.A1_at | 4.844206 |
| si:rp71-15k1.2; myeloid/lymphoid or mixed-lineage leukemia-4a | Dr.9377.1.A1_at | 4.679487 |
| si:ch211-45m15.2 | Dr.8200.1.S1_at | 4.653204 |
| zic family member-2 (odd-paired homolog, Drosophila) b | Dr.10614.1.A1_at | 4.526444 |
| zgc:77724 | Dr.14413.1.A1_at | 4.213999 |
| zgc:162730 | Dr.3936.1.A1_at | 3.742291 |
| RNA binding motif protein 4.1 | Dr.21594.1.A1_at | 3.487187 |
| l(3)mbt-like 2 (Drosophila) | Dr.17271.1.A1_at | 3.197401 |
| LIM and SH3 protein-1 | Dr.25320.1.A1_at | 2.882738 |
| LIM and calponin homology domains-1 | Dr.10986.1.A1_at | 2.689072 |
| zgc:158673 | Dr.4838.1.A1_at | 2.108265 |
| si:ch73-38p6.1 | Dr.3142.1.S1_at | 1.823564 |
| zgc:56116 | Dr.745.1.A1_at | 1.590587 |
| Phosphate regulating gene with homologues to endopeptidases on the X chromosome | Dr.25529.1.S1_at | 1.544958 |
| Zinc finger protein-207, a | Dr.93.1.A1_a_at | 0.65725 |
| Retinoic acid receptor, alpha b | Dr.305.1.S1_at | 0.566773 |
| Alpha thalassemia/mental retardation syndrome X-linked, like; alpha thalassemia/mental retardation syndrome X-linked homolog (human) |
Dr.26404.2.S1_at | 0.502432 |
| APC11 anaphase promoting complex subunit 11 homolog | Dr.18189.1.S1_at | 0.491208 |
| zgc:174649; similar to zinc finger protein-180 (HHZ168); hypothetical LOC570013; zgc:174651; similar to zinc finger protein-560; zgc:173603 |
Dr.21894.1.A1_at | 0.474262 |
| zgc:56628 | Dr.18443.1.S1_at | 0.462863 |
| Carboxypeptidase-A5 | Dr.4882.1.S1_at | 0.333607 |
| zgc:153061 | Dr.6513.1.A1_a_at | 0.323466 |
| zgc:153171; F-box only protein 11-like | Dr.12361.1.S1_at | 0.308205 |
| wu:fi20g04 | Dr.7293.1.S1_at | 0.262579 |
| Novel protein similar to human rearranged L-myc fusion sequence (RLF) | Dr.15042.1.A1_at | 0.256942 |
| si:dkeyp-89d7.1 | Dr.4953.1.S1_at | 0.236327 |
| Zinc finger, FYVE domain containing 21 | Dr.3023.1.S1_at | 0.216677 |
| wu:fd12d03 | Dr.2692.1.A1_at | 0.210638 |
| Six-cysteine containing astacin protease-1 | Dr.21939.1.A1_at | 0.201674 |
| Janus kinase-1 | Dr.18349.1.A1_at | 0.188976 |
| zgc:158455 | Dr.15141.1.A1_at | 0.184993 |
| LIM homeobox-1a | Dr.24443.1.A1_at | 0.182767 |
| Zinc fingers and homeoboxes 3 | Dr.26180.1.A1_at | 0.150721 |
| Transcription elongation factor A (SII), 3 | Dr.15634.1.S1_at | 0.093517 |
| Vitamin binding | ||
| Cysteine conjugate-beta lyase; cytoplasmic (glutamine transaminase K, kynurenine aminotransferase) |
Dr.2828.2.A1_at | 9.133776 |
| Similar to Kynurenine-oxoglutarate transaminase-3 (Kynurenine-oxoglutarate transaminase III) (Kynurenine aminotransferase III) (KATIII) (cysteine-S-conjugate beta-lyase 2); cysteine conjugate-beta lyase-2 |
Dr.18800.1.S1_at | 1.518084 |
| Procollagen-proline, 2-oxoglutarate 4-dioxygenase, alpha polypeptide 2; hypothetical protein LOC100151456 |
Dr.19144.1.A1_at | 0.25343 |
Fold change = (signal intensity of a gene in the muscle of crisp grass carp)/(signal intensity of the gene in the muscle of grass carp).