Table 1.
Parent transcript | RNA sequence: 123456789 | D231V:WT affinity ratio |
HBB intron1 (13-mer) | UU CCCACCCUU AG | 2.2 |
HBB(U8 > A) | UU CCCACCCAU AG | 0.4 |
NF1 intron10a (13-mer) | GU UUUGUUUUU AG | 2.3 |
NF1(U3 > A) | GU UUAGUUUUU AG | 2.2 |
NF1(U8 > A) | GU UUUGUUUAU AG | 0.3 |
NF1(U8 > G) | GU UUUGUUUGU AG | 0.5 |
NF1 intron10a (9-mer) | UUUGUUUUU | 2.0 |
RP2 intron3 | GUUUGCUUA | 2.5 |
RP2(U4 > A) | GUUAGCUUA | 2.6 |
RP2(U8 > A) | GUUUGCUAA | 1.0 |
RP2 intron 4 | UAUUUAAAA | 0.7 |
Four nucleotides in the 5′ region and four nucleotides in the 3′ region are expected to contact RRM2 and RRM1, respectively, of U2AF65. The anticipated D231V-bound nucleotide is in italic type. Nucleotide mutations relative to the WT (Wt) RNA sequence are highlighted in bold.