Table 1. Residence time (in ns) of Na+ and K+ for different atoms in the nucleic acid structures.
Na+(K+) residence times (ns) | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
B-DNA | N4 | O2 | O6 | N2 | N3 | N7 | O3′ | O4′ | OP1 | OP2 |
0.83(1.74) | –(1.82) | 1.01(2.03) | –(1.84) | –(1.48) | 0.25(1.37) | 0.38(0.41) | –(1.74) | 0.39(0.86) | 0.35(0.80) | |
Z-DNA | O2 | O6 | N7 | O3′(C) | O3′(G) | OP1(C) | OP1(G) | OP2(C) | OP2(G) | |
–(0.30) | –(0.62) | –(0.68) | 1.25(2.12) | –(0.51) | 0.43(1.18) | 2.26(4.75) | 0.35(0.86) | 0.65(1.84) | ||
A-RNA | N4 | O2 | O6 | N7 | O2′ | OP1 | OP2 | |||
0.43(2.45) | –(0.38) | 0.54(1.47) | 0.35(0.85) | –(0.52) | 0.42(1.58) | 0.47(1.56) | ||||
Z-RNA | O2 | O6 | O2′(C) | O2′(G) | O3′(C) | O3′(G) | OP1(C) | OP1(G) | OP2(C) | OP2(G) |
7.83(2.79) | –(0.91) | 8.56(5.42) | –(0.71) | 1.10(1.43) | –(0.67) | 0.43(0.99) | 1.21(1.92) | 0.36(0.76) | 0.60(1.82) |
These results are for 0.4-M salt concentration.