Table 1. Average wall time required for common secondary structure prediction for 5S rRNA, tRNA, RNase P and SRP RNA homologous RNA sequence pairs.
5S rRNA | tRNA | SRP RNA | RNase P RNA | |
---|---|---|---|---|
Dynalign II | 55 s | 18 s | 5 h:6 min:30 s | 53 min:41 s |
Dynalign | 49 s | 16 s | 4 h:38 min:37 s | 50 min:15 s |
Four cores of a 12 core Intel Xeon E5–2695 v2 processor (2.4GHz) were used for parallel computations of RNase P RNA and SRP RNA sequence pairs. One core of an Intel Xeon E5–2695 v2 processor (2.4GHz) was used for computations of 5S rRNA and tRNA sequence pairs.