Skip to main content
. 2014 Oct 10;42(22):e167. doi: 10.1093/nar/gku918

Table 2. Comparison between snoReport and ptRNApred.

Organism RNA class Total number of sequencesa Number of sequences identified by snoReport (% of total number of sequences) Number of sequences identified by ptRNApred (% of total number of sequences)
M. musculus snoRNA 1603 737(46%) 1589(99%)
H. sapiens snoRNA 1641 852(52%) 1611(98%)
snoU13b 245b 0(0%)b 245(100%)b

A murine and a human dataset of snoRNA was abstracted from Ensembl (49) and performance of ptRNApred was compared to snoReport as a well-established tool for snoRNA prediction. ptRNApred achieved higher sensitivity than snoReport (99 versus 46% on the murine and 98 versus 52% on the human set of sequences). Regarding snoU13, a member of the snoRNAs, there is an even larger difference in the sensitivity (100 versus 0%).

aTotal number of snoRNA-sequences downloaded from Ensembl (49).

bsnoU13 among the human snoRNA sequences.