Table 2. Comparison between snoReport and ptRNApred.
Organism | RNA class | Total number of sequencesa | Number of sequences identified by snoReport (% of total number of sequences) | Number of sequences identified by ptRNApred (% of total number of sequences) |
---|---|---|---|---|
M. musculus | snoRNA | 1603 | 737(46%) | 1589(99%) |
H. sapiens | snoRNA | 1641 | 852(52%) | 1611(98%) |
snoU13b | 245b | 0(0%)b | 245(100%)b |
A murine and a human dataset of snoRNA was abstracted from Ensembl (49) and performance of ptRNApred was compared to snoReport as a well-established tool for snoRNA prediction. ptRNApred achieved higher sensitivity than snoReport (99 versus 46% on the murine and 98 versus 52% on the human set of sequences). Regarding snoU13, a member of the snoRNAs, there is an even larger difference in the sensitivity (100 versus 0%).
aTotal number of snoRNA-sequences downloaded from Ensembl (49).
bsnoU13 among the human snoRNA sequences.