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. 2014 Oct 29;4(12):2519–2533. doi: 10.1534/g3.114.015289

Figure 2.

Figure 2

(A, B) Genetic maps and (C, D) pairwise linkage comparisons of markers for each cross (Top: 3D1 × 3D7; Bottom: 1A5 × 1E4). (C, D) Within the pairwise linkage comparison plot marker-pairwise recombination fractions are shown in the upper left triangle and LOD scores for tests of r = 1/2 are shown in the lower right triangle. Red corresponds to a large LOD or a small recombination fraction, while blue is the reverse. Thus red indicates linkage, while blue indicates no linkage.