Table 7. Large-effect QTL intervals containing ≤30 candidate genes.

Cross	Environment	Colony Age, dpi	Chromosome	Estimated Position of Peaking Marker, kb	LOD Score at Peak	P Value	Estimated Position of Proximal Marker, kba	Estimated Position of Distal Marker Flanking, kba	Bayes Confidence Interval Length, kb	Number of Sequence Variationsb	Number of Genes b	Number of Genes Affected by Sequence Variationsb	Percentage of Total Genes Affected by Sequence Variations, %b	Number of Sequence Variation Affected Genes With Unknown Functionb	Percentage of Total Sequence Variation Affected Genes With Unknown Function, %b
3D1 × 3D7	Cold	11	10	649	9.55	<0.001	634	673	39	59	15	12	80	2	17
3D1 × 3D7	Control	8	11	581	32.2	<0.001	560	603	43	8	14	4	29	0	0
1A5 × 1E4	Fungicide	14	4	420	9.47	<0.001	417	426	9	7	2	1	50	0	0
1A5 × 1E4	Cold	11	8	430	7.65	<0.001	348	446	99	132	27	22	81	9	41

QTL, quantitative trait loci; LOD, logarithm of odds.

^aMarkers flanking Bayes confidence interval.

^bNumbers refer to within Bayes confidence interval.