Cytospin preparations for distinguishing intracellular from extracellular pathogens and identifying infiltration by underlying malignancy |
B |
Gram stain |
B |
Giemsa or May-Grünwald-Giemsa stain (assessment of macrophages, ciliated epithelium, leukocytes) |
B |
Mycobacterium tuberculosis (M. tuberculosis) polymerase chain reaction (PCR) |
A |
PCR for Pneumocystis jirovecii (P. jirovecii); quantitative if possible |
A |
Calcofluor white or equivalent (assessment of fungi and P. jirovecii) |
A |
Direct immunofluorescence test for P. jirovecii (confirmatory) |
A |
Aspergillus antigen (Galactomannan Sandwich ELISA) |
A |
Bacteriological cultures (Quantitative or semi-quantitative): dilutions of 10−2 and 10−4; culture media: blood agar, MacConkey/Endo, Levinthal/blood (bacterial culture), Legionella-BCYE or equivalent (Legionella spp.), for mycobacteria at least one solid and one liquid medium (e.g. Löwenstein–Jensen agar and Middlebrook 7H9 broth or equivalent), Sabouraud/Kimmig or equivalent (fungal culture) |
A |
Optional program |
Enrichment culture (Brain–Heart Infusion broth, dextrose broth) |
C |
Legionella PCR |
B |
PCR for cytomegalovirus (CMV), Respiratory Syncytial Virus, influenza A/B, parainfluenza 1-3, metapneumovirus and adenovirus |
B |
Quantitative PCR for Varicella Zoster Virus |
B |
Panfungal or Aspergillus PCR |
B |
Peripheral blood cultures 1 h after bronchoscopy to detect transient bacteremia |
C |
Throat swab to assess oral flora in comparison with BAL |
C |