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. 2014 Dec 17;9(12):e114484. doi: 10.1371/journal.pone.0114484

Table 4. Statistical summary of genomic inbreeding coefficients of 1022 individuals with genotyped parents in the swine sample.

Method Short name, source of Aii, Ajk or γαjk Mean±SD Range
i) F  =  Aii–1 F-I, Aii of Equation 23 0.013±0.098 −0.156, 0.436
F  =  Aii–1 F-II, Aii of Equation 25 −0.019±0.095 −0.183, 0.390
F  =  Aii–1 F-IV, Aii of Equation 27 0.009±0.132 −0.197, 0.541
F  =  Aii–1 F-V, Aii of Equation 29 −0.026±0.120 −0.220, 0.478
ii) F  =  Aii–1 F-IVb, [4], [12] 0.024±0.056 −0.098, 0.309
iii) FA  =  0.5Ajk FA-I, Ajk of Equation 23 0.026±0.048 −0.060, 0.190
FA  =  0.5Ajk FA –II, Ajk of Equation 25 0.025±0.046 −0.058, 0.184
FA  =  0.5Ajk FA –IV, Ajk of Equation 27 0.028±0.048 −0.062, 0.199
FA  =  0.5Ajk FA –V, Ajk of Equation 29 0.025±0.045 −0.058, 0.188
iv) Fγ  =  0.5γαjk Fγ-III, γαjk from Equations 33 and 25 0.024±0.043 −0.061, 0.159
Fγ  =  0.5γαjk Fγ-VI, γαjk from Equations 33 and 29 0.023±0.042 −0.059, 0.154
Pedigree Fp - 0.021±0.024 0.000, 0.159

Definition IVb: The individual's diagonal element of genomic additive relationship of each SNP is 1/p2, 0 and 1/p1 for Inline graphic, Inline graphic and Inline graphic genotypes respectively, where p1  =  allele frequency of A 1, and p2 = 1−p1 [4], [12]. Fp is the pedigree inbreeding coefficient.