Table 1.

Isolates and genome subtyping results

Isolates	Genbank accession No.	Serotype	Lineage	MVLST a	MLVA	Reference
F2-382	BAZC01000001–01000056	4b	N/A	1-3-1-3-1-3	13-18-9	This study
NIHS-28	BAZD01000001–01000036	4b	N/A	1-3-1-3-1-3	13-18-9	This study
F2365	NC_002973	4b	I	1-3-1-3-1-3	14-18-9	Nelson et al. [25]
EGDe	NC_003210	1/2a	II	7-9-8-6-4-2	25-11-7	Glaser et al. [26]
HCC23	NC_011660	4a	III	4-5-4-1-*-4	8-22-4	Steele et al. [27]
Clip80459	NC_012488	4b	I	2-4-2-5-2-3	15-20-5	Hain et al. [20]
08-5578	NC_013766	1/2a	II	7-8-7-6-3-1	34-22-7	Gilmour et al. [28]
08-5923	NC_013768	1/2a	II	7-8-7-6-3-1	34-22-7	Gilmour et al. [28]
L99	NC_017529	4a	III	4-5-4-1-*-4	8-22-4	Hain et al. [20]
M7	NC_017537	4a	N/A	5-5-4-1-*-4	8-22-4	Chen et al. [23]
10403S	NC_017544	1/2a	N/A	8-12-6-6-3-2	20-11-7	den Bakker et al. [29]
FSL R2-561	NC_017546	1/2c	N/A	7-9-8-6-4-2	21-11-7	den Bakker et al. [29]
Finland1998	NC_017547	1/2a	N/A	7-8-7-6-3-2	25-14-7	den Bakker et al. [29]
07PF0776	NC_017728	4b	N/A	2-4-2-5-2-3	14-18-9	McMullen et al. [24]
ATCC19117	NC_018584	4a	I	2-1-3-3-1-3	17-13-6	Kuenne et al. [21]
SLCC2378	NC_018585	4e	I	1-3-1-3-1-3	17-18-9	Kuenne et al. [21]
SLCC2540	NC_018586	3b	I	3-7-2-4-2-3	10-11-5	Kuenne et al. [21]
SLCC2755	NC_018587	1/2b	I	2-6-3-3-2-3	15-16-5	Kuenne et al. [21]
SLCC2479	NC_018589	3c	II	7-9-8-6-4-2	21-11-7	Kuenne et al. [21]
SLCC2376	NC_018590	4c	III	6-2-5-2-*-4	9-17-4	Kuenne et al. [21]
SLCC2482	NC_018591	7	I	2-6-3-3-2-3	15-16-6	Kuenne et al. [21]
SLCC5850	NC_018592	1/2a	II	*-10-6-6-3-2	19-11-7	Kuenne et al. [21]
SLCC7179	NC_018593	3a	II	7-11-6-6-3-2	10-12-9	Kuenne et al. [21]
L312	NC_018642	4b	I	2-4-2-5-2-3	15-15-5	Kuenne et al. [21]

^aAsterisks (*) indicate that the genome region corresponding to the allele was not found.