| Fold similarity |
Annolite |
http://salilab.org/DBAli/?page=tools&action=f_annolitechain |
| CATHEDRAL |
http://www.cathdb.info/cgi-bin/CathedralServer.pl |
| CE |
http://cl.sdsc.edu/ |
| DALI/DaliLite |
http://ekhidna.biocenter.helsinki.fi/dali_server/start |
| FATCAT |
http://fatcat.burnham.org/ |
| GRATH |
http://www.biochem.ucl.ac.uk/cgi-bin/cath/Grath.pl |
| MATRAS |
http://biunit.aist-nara.ac.jp/matras/ |
| MAMMOTH |
http://ub.cbm.uam.es/mammoth/ |
| SCALI |
http://www.bioinfo.rpi.edu/bystrc/SCALI/ |
| SSAP |
http://www.cathdb.info/cgi-bin/cath/SsapServer.pl |
| SSM |
http://www.ebi.ac.uk/msd-srv/ssm/ssmstart.html |
| STRUCTAL |
http://molmovdb.mbb.yale.edu/align/ |
| TOPS+ |
http://balabio.dcs.gla.ac.uk/mallika/WebTOPS/ |
| VAST |
http://www.ncbi.nlm.nih.gov/Structure/VAST/vastsearch.html |
|
| Active sites |
LigBase |
http://modbase.compbio.ucsf.edu/ligbase/ |
| MarkUs |
http://luna.bioc.columbia.edu/honiglab/mark-us/cgi-bin/submit.pl |
| MOTIF Search |
http://motif.genome.jp/ |
| PatchFinder |
http://patchfinder.tau.ac.il/ |
| PDBSiteScan |
http://wwwmgs.bionet.nsc.ru/mgs/gnw/pdbsitescan/ |
| PINTS |
http://www.russell.embl.de/pints/ |
| PROCAT |
http://www.biochem.ucl.ac.uk/bsm/PROCAT/getPDBFILE.html |
| Query3D |
http://pdbfun.uniroma2.it/ |
| RIGOR/SPASM |
http://xray.bmc.uu.se/usf/spasm.html |
| SARIG |
http://bioinfo2.weizmann.ac.il/~pietro/SARIG/V3/index.html |
| SuMo |
http://sumo-pbil.ibcp.fr/cgi-bin/sumo-welcome |
| THEMATICS |
http://pfweb.chem.neu.edu/thematics/submit.html |
|
| Pockets/clefts |
CASTp |
http://sts.bioengr.uic.edu/castp/index.php |
| CAVER |
http://loschmidt.chemi.muni.cz/caver/ |
| ef-Site |
http://ef-site.hgc.jp/eF-site/index.jsp |
| FEATURE |
http://feature.stanford.edu/webfeature/ |
| FINSITE |
http://cssb.biology.gatech.edu/skolnick/files/FINDSITE/index.html |
| LIGSITEcsc |
http://projects.biotec.tu-dresden.de/pocket/ |
| PocketPicker |
http://gecco.org.chemie.uni-frankfurt.de/pocketpicker/index.html |
| SURF’sUP! |
http://asia.genesilico.pl/surfs_up/ |
| SURFNET |
http://www.biochem.ucl.ac.uk/~roman/surfnet/surfnet.html |
|
| Protein-protein Interaction |
BIND |
http://bond.unleashedinformatics.com/ |
| DIP |
http://dip.doe-mbi.ucla.edu/dip/Main.cgi |
| HAPPI |
http://discern.uits.iu.edu:8340/HAPPI/index.html |
| IntAct |
http://www.ebi.ac.uk/intact/main.xhtml |
| MINT |
http://mint.bio.uniroma2.it/mint/Welcome.do |
| MIPS |
http://mips.helmholtz-muenchen.de/proj/ppi/ |
| PIPs |
http://www.compbio.dundee.ac.uk/www-pips/ |
| PPISearch |
http://gemdock.life.nctu.edu.tw/ppisearch/index.php |
| PRISM |
http://prism.ccbb.ku.edu.tr/prism/ |
| ProMate |
http://bioinfo.weizmann.ac.il/promate/promate.html |
| STRING |
http://string-db.org/ |
|
| MetaServers |
Gene3D |
http://gene3d.biochem.ucl.ac.uk/Gene3D/ |
| JAFA |
http://jafa.burnham.org |
| Interpro/InterproScan |
http://www.ebi.ac.uk/Tools/InterProScan/ |
| ProFunc |
http://www.ebi.ac.uk/thornton-srv/databases/ProFunc/ |
| ProKnow |
http://proknow.mbi.ucla.edu/ |
| ProtFun |
http://www.protfun.com/ |
| PSiFR |
http://psifr.cssb.biology.gatech.edu/ |
| SiteEngine |
http://bioinfo3d.cs.tau.ac.il/SiteEngine/ |
