Table 1.
Disease-related LncRNA in human
| Symbol | Cancers | Chromosome location | Start | End | Strand | Species | Alias | NCBI No. | |
|---|---|---|---|---|---|---|---|---|---|
| 7SK | Cancer | chr6 | 52860418 | 52860749 | + | Human | RN7SK; 7SK | NR_001445.2 | 22377309 |
| BCAR4 | Breast cancer | chr16 | 11913687 | 11922689 | - | Human | BCAR4 | NR_024049.1 | 21506106 |
| BCYRN1 | Breast cancer | chr2 | 47562454 | 47562653 | + | Human | BCYRN1; BC200; BC200a; LINC00004; NCRNA00004 | NR_001568.1 | 15240511 |
| BOK-AS1 | Testicular cancer | chr2 | 242483799 | 242498558 | - | Human | BOK-AS1; BOKAS; NAToB; BOK-AS; NCRNA00151 | NR_033346.1 | 19287972 |
| C1QTNF9B-AS1 | Prostate cancer | chr13 | 24463028 | 24466242 | + | Human | C1QTNF9B-AS1; PCOTH | BC073902 | 15930275 |
| CASC2 | Endometrial cancer | chr10 | 119806332 | 119969665 | + | Human | CASC2; C10orf5 | NR_026939.1 | 15024726 |
| CBR3-AS1 | Prostate cancer | chr21 | 37504065 | 37528606 | - | Human | CBR3-AS1; PlncRNA-1 | NR_038892.1 | 22264502 |
| CCAT1 | Colorectal cancer | chr8 | 128219629 | 128231724 | - | Human | CCAT1 | XR_108886.3 | 23416875 |
| CDKN2B-AS1 | Breast cancer | chr9 | 21994790 | 22121096 | + | Human | CDKN2B-AS1; ANRIL; p15AS; CDKN2BAS; CDKN2B-AS; NCRNA00089; RP11-145E5.21 | NR_003529.20 | 17440112 |
| DNM3OS | Ovarian cancer | chr1 | 172107724 | 172113975 | - | Human | DNM3OS; DNM3-AS1; MIR199A2HG | NR_038397.1 | 20400975 |
| DSCAM-AS1 | Breast cancer | chr21 | 41755010 | 41757285 | + | Human | DSCAM-AS1; M41 | NR_038896.1 | 12177779 |
| EPB41L4A-AS1 | Cancer | chr5 | 111496223 | 111498198 | + | Human | EPB41L4A-AS1; TIGA1; C5orf26; NCRNA00219 | NR_015370.2 | 16973895 |
| GAS5 | Breast cancer | chr1 | 173833039 | 173837125 | - | Human | GAS5; SNHG2; NCRNA00035 | NR_002578.7 | 20673990 |
| H19 | Bladder cancer | chr11 | 2016406 | 2019065 | - | Human | H19; ASM; BWS; WT2; ASM1; PRO2605; D11S813E; LINC00008; NCRNA00012 | NR_002196.5 | 11193051 |
| HIF1A-AS1 | Kidney cancer | chr14 | 62147759 | 62162536 | - | Human | HIF1A-AS1; 5’aHIF-1A | 21897117 | |
| HOTAIR | Breast cancer | chr12 | 54356096 | 54362515 | - | Human | HOTAIR; HOXAS; HOXC-AS4; HOXC11-AS1; NCRNA00086 | NR_047517.15 | 19182780 |
| IGF2-AS | Prostate cancer | chr11 | 2161758 | 2169896 | + | Human | IGF2-AS; PEG8; IGF2AS; IGF2-AS1 | NR_028044.1 | 19767753 |
| KCNQ1OT1 | Colorectal cancer | chr11 | 2661768 | 2721228 | - | Human | “KCNQ1OT1; LIT1; KvDMR1; KCNQ10T1; KCNQ1-AS2; KvLQT1-AS; NCRNA00016 | 16965397 | |
| lincRNAp21 | Lung cancer | N/A | N/A | N/A | N/A | Human | N/A | N/A | 22535282 |
| LSINCT5 | Breast cancer | N/A | N/A | N/A | N/A | Human | N/A | N/A | 21532345 |
| MALAT1 | Cancer | chr11 | 65265233 | 65273940 | + | Human | MALAT1; HCN; NEAT2; MALAT-1; PRO2853; LINC00047; NCRNA00051 | NR_002819.6 | 20711585 |
| MEG3 | Bladder cancer | chr14 | 101292445 | 101327363 | + | Human | MEG3; GTL2; FP504; prebp1; PRO0518; PRO2160; LINC00023; NCRNA00028 | NR_002766.7 | 14602737 |
| MIR31HG | Breast cancer | chr9 | 21454267 | 21559697 | - | Human | MIR31HG | NR_027054.1 | 22289355 |
| PCA3 | Prostate cancer | chr9 | 79379354 | 79402465 | + | Human | PCA3; DD3; NCRNA00030 | NR_015342.12 | 18602209 |
| PCAT1 | Prostate cancer | chr8 | 128025399 | 128033259 | + | Human | PCAT1; PCAT-1 | NR_045262.1 | 21804560 |
| PCGEM1 | Prostate cancer | chr2 | 193614571 | 193641625 | + | Human | PCGEM1; LINC00071; NCRNA00072 | NR_002769.2 | 16515751 |
| PCNCR1 | Prostate cancer | N/A | N/A | N/A | N/A | Human | N/A | N/A | 22535282 |
| PVT1 | Breast cancer | chr8 | 128806779 | 129113499 | + | Human | PVT1; LINC00079; NCRNA00083 | NR_003367.6 | 17908964 |
| RRP1B | Cancer | chr21 | 45079432 | 45115960 | + | Human | RRP1B; Nnp1; RRP1; NNP1L; KIAA0179 | NM_015056.2 | 19710015 |
| SRA1 | Breast cancer | chr5 | 139929653 | 139937678 | - | Human | SRA1; SRA; SRAP; STRAA1; pp7687 | NM_001035235.6 | 20079837 |
| TDRG1 | Testicular cancer | chr6 | 40346163 | 40347631 | + | Human | TDRG1; LINC00532 | NR_024015.1 | 21243750 |
| UCA1 | Bladder cancer | chr19 | 15939757 | 15946230 | + | Human | UCA1; CUDR; LINC00178; NCRNA00178 | NR_015379.3 | 20117985 |
| WRAP53 | Cancer | chr17 | 7589389 | 7606820 | + | Human | WRAP53; DKCB3; TCAB1; WDR79 | NM_001143990.1 | 21441950 |
| XIST | Breast cancer | chrX | 73040495 | 73072588 | - | Human | XIST; SXI1; swd66; DXS1089; DXS399E; LINC00001; NCRNA00002 | NR_001564.3 | 17545591 |
| Yiya | Cancer | chr1 | 214098092 | 214099997 | + | Human | LINC00538; Yiya | NR_046189.1 | 22258142 |
| ZNFX1-AS1 | Breast cancer | chr20 | 47894715 | 47905797 | + | Human | ZNFX1-AS1; HSUP1; HSUP2; ZFAS1; C20orf199; NCRNA00275 | NR_003604.2 | 21460236 |