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. Author manuscript; available in PMC: 2016 Jan 1.
Published in final edited form as: Menopause. 2015 Jan;22(1):108–113. doi: 10.1097/GME.0000000000000291

Table 2.

Basic statistics of the 29 analyzed SNPs separately for European American (EA) and African American (AA) pre and peri-menopausal women.

EA AA
SNP Position %Genoa MAFb Allelesc HWEd %Geno MAF Alleles HWE
rs11080121 28528842 99.5 0.476 T/C 0.4372 100 0.226 T/C 0.3512
rs 140700 28543389 98.5 0.074 C/T 0.9813 98.5 0.042 C/T 0.6824
rs 8076005 28547210 95.9 0.163 A/G 0.6216 94.2 0.356 G/A 0.3002
rs 2066713 28551665 100 0.39 G/A 0.432 99.5 0.273 G/A 0.7937
rs 4251417 28551858 99.5 0.099 C/T 0.4476 99.5 0.017 C/T 0.8652
rs 16965628 28555425 97.6 0.066 G/C 0.3623 97.6 0.294 G/C 0.6535
rs 4404067 55683682 97.7 0.321 G/A 0.8974 96.6 0.497 A/G 0.1325
rs 4238784 55687065 98 0.222 A/G 0.7291 97.6 0.129 A/G 0.3879
rs 747107 55695721 98.5 0.155 C/T 0.2652 99 0.157 C/T 0.1801
rs 13333066 55703048 98.5 0.295 C/T 0.8932 95.1 0.362 C/T 0.4792
rs 187715 55704042 95.1 0.047 T/C 0.7303 94.2 0.015 T/C 0.954
rs 36026 55704795 99.6 0.103 C/A 0.1028 100 0.027 C/A 0.9554
rs 36024 55706391 93.4 0.416 G/A 0.5753 92.2 0.463 A/G 0.1496
rs 36021 55711950 95.8 0.431 A/T 0.6286 96.6 0.352 A/T 0.4489
rs 3785151 55712519 99.6 0.173 G/C 0.6334 98.5 0.429 C/G 0.7798
rs 36020 55713088 97.8 0.132 C/T 0.4086 97.6 0.052 C/T 0.7684
rs 16955591 55713786 99.4 0.132 C/T 0.7487 99 0.221 C/T 0.173
rs 3785152 55716550 99.7 0.109 C/T 0.5574 100 0.206 C/T 0.0173
rs 40147 55716840 98.7 0.306 G/A 0.959 99.5 0.21 G/A 0.0947
rs 1814270 55717077 99.9 0.433 T/C 0.1401 99 0.181 T/C 0.4755
rs 5564 55725975 99.5 0.078 A/G 0.0448 100 0.017 A/G 0.9554
rs 5568 55730124 99 0.34 A/C 0.1158 99.5 0.11 A/C 0.4319
rs 1566652 55731575 96.8 0.356 G/T 0.0119 98.5 0.131 G/T 0.5551
rs 5569 55731835 95.2 0.257 G/A 0.0616 95.1 0.094 G/A 0.2418
rs 2242447 55735912 98 0.346 T/C 0.7755 97.1 0.248 C/T 0.7783
rs 42460 55737656 99.5 0.085 A/G 0.1988 99.5 0.1 A/G 0.3548
rs 16955708 55741456 99.2 0.152 T/C 0.8881 100 0.184 T/C 0.8415
rs 12596924 55744647 99.9 0.211 T/G 0.9591 98.1 0.374 G/T 0.4403
rs 258099 55747177 98 0.319 T/C 0.3883 97.6 0.249 C/T 0.6904
a

%geno: the percentage of successful genotyping.

b

MAF: minor allele frequency.

c

Alleles are shown as major/minor allele, differential major/minor alleles between EA and AA are in bold.

d

HWE: Hardy-Weinberg equilibrium calculated using controls only.