Table 1.
Marker | Primer | Sequences (5′->3′) |
---|---|---|
Pfs230 | ||
Primary | Pfs230_PF | AAG ACA TGT CGC CCA GGG ATA |
Pfs230_PR | TTC TTC TTC ATC ACC AAA TGG ATA T | |
Nested | Pfs230_NF | VIC - CAG GGA TAA TTT TGT AAT RGA TGA TGa |
Pfs230_NR | ACC TTG CCT TTC TTT TTC ATC TAC A - tail | |
Pfg377 | ||
Primary | Pfg377_PF | CAC AAC GAA GGT TAT ATA CCT CAT AC |
Pfg377_PR | TCC ATT CTT CTT TAA GGT TCG CTT C | |
Nested | Pfg377_NF | 6FAM - GAA GAT GAC GAA GGG GAT GAA G |
Pfg377_NR | CTG TAA GAA TTG GTT ATT ACT TTT GTG G - tail | |
PF11.1 | ||
Primary | Pf11.1_PF1b | GAT ATA TTC TAA TAA T|TG TTC CAA TGG |
Pf11.1_PF2 | AAG TGC AGG GGA TAG TGC AG | |
Pf11.1_PR | CGG TAA TAC CAT AAG CTC CTC CT | |
Nested | Pf11.1_NF | 6FAM - GGA ATA AGG ATG ATG ATG ACG AA |
Pf11.1_NR | AAC CTT CAA ATT CTT TGT CTC TTT C - tail | |
PF11_0214 | ||
Primary | PF11_0214_PF | TCG AGA CAA ATT GAA AAG TTA TGG |
PF11_0214_PR | TTA GTG GAT AAA TGA ATA TCT ACC G | |
Nested | PF11_0214_NF | 6FAM - AAT GAT ACA GAT TGT GAA GAA TGG T |
PF11_0214_NR | TGA GGA ATA TCG TTT TGT ATA AAT GTT - tail | |
PFI1210w | ||
Primary | PFI1210w_PF | TTG ATA AGG GAT ATA TAC ACA ACC ATA |
PFI1210w_PR | TTC CCG TTG TGT ATT TAA GTA GAA T | |
Nested | PFI1210w_NF | 6FAM - TGT TTC AAT TTA CCA TCT TTC TTT TC |
PFI1210w_NR | GTT TTT CAA TTT TTA TGT TGT TCT CCA - tail | |
PFL0545w | ||
Primary | PFL0545w_PF | GGA AGG AAA CGA AGA AGA AAC A |
PFL0545w_PR | AAA GAT TGA AAT GGA GAT TCA CCT | |
Nested | PFL0545w_NF | VIC - TGA CAA AGG GCA CTT TAT TAT TT |
PFL0545w_NR | TTT CTT CAA CAG CAT TTT GCA T – tail |
a Primer sequence contains a wobble: R = A/G.
b Pf11.1_PF1 is spanning an intron boundary indicated by “|”.