Table 1.
Species, Sequencing Methods, and Descriptive Statistics.
| Species Abbr. | Species | Sequence Type | Source | Assembly Method | No. of Unigenes | Contig N50 | Average Length | ||
|---|---|---|---|---|---|---|---|---|---|
| Glyma | Glycine max | Genomic | Phytozome | Genomic | 54,175 | 1,572 | 1,185.6 | ||
| Codmo | Codariocalyx motorius | NGS 1 | 1kp | Trinity | 40,430 | 1,217 | 819.0 | ||
| Apiam | Apios americana | NGS 2 | Cannon et al. (this study) | Trinity | 44,658 | 1,606 | 877.5 | ||
| Medtr | Medicago truncatula | Genomic | JCVI | Genomic | 62,383 | 1,326 | 871.8 | ||
| Latsa | Lathyrus sativus | NGS 1 | 1kp | Trinity | 61,935 | 1,146 | 576.6 | ||
| Astme | Astragalus membranaceus | NGS 1 | 1kp | Trinity | 76,669 | 1,059 | 691.8 | ||
| Glyle | Glycyrrhiza lepidota | NGS 1 | 1kp | Trinity | 70,070 | 1,105 | 711.1 | ||
| Lupan | Lupinus angustifolius | NGS 1 | 1kp | Trinity | 49,694 | 764 | 565.6 | ||
| Luppo | Lupinus polyphyllus | NGS 1 | 1kp | Trinity | 72,174 | 511 | 325.5 | ||
| Arahy | Arachis hypogaea | NGS 3 | GenBank | Trinity | 49,908 | 1,009 | 702.9 | ||
| Clalu | Cladrastis lutea | NGS 1 | 1kp | Trinity | 106,653 | 629 | 373.9 | ||
| Xanza | Xanthocercis zambesiaca | NGS 1 | 1kp | Trinity | 111,179 | 1,099 | 539.4 | ||
| Desil | Desmanthus illinoiensis | NGS 1 | 1kp | Trinity | 30,173 | 534 | 383.2 | ||
| Chafa | Chamaecrista fasciculata | NGS 1 | Cannon et al. (2010) | Trinity | 40,414 | 577 | 484.8 | ||
| Senhe | Senna hebicarpa | NGS 1 | 1kp | Trinity | 71,854 | 529 | 321.8 | ||
| Gletr | Gleditsia triacanthos | NGS 1 | 1kp | Trinity | 59,700 | 791 | 457.3 | ||
| Gymdi | Gymnocladus dioicus | NGS 1 | 1kp | Trinity | 93,331 | 636 | 368.1 | ||
| Copof | Copaifera officinalis | NGS 1 | 1kp | Trinity | 67,940 | 1,475 | 611.1 | ||
| Bauto | Bauhinia tomentosa | NGS 1 | 1kp | Trinity | 95,565 | 473 | 347.5 | ||
| Cerca | Cercis Canadensis | NGS 1 | 1kp | Trinity | 48,374 | 969 | 543.3 | ||
| Quisa | Quillaja saponaria | NGS 1 | 1kp | Trinity | 74,392 | 861 | 472.5 | ||
| Pollu | Polygala lutea | NGS 1 | 1kp | Trinity | 129,993 | 719 | 414.4 | ||
| Alnse | Alnus serrulata | NGS 1 | 1kp | Trinity | 86,216 | 929 | 468.8 | ||
| Cucsa | Cucumis sativus | Genomic | Phytozome | Genomic | |||||
| Frave | Fragaria vesca | Genomic | Phytozome | Genomic | |||||
| Prupe | Prunus persica | Genomic | Phytozome | Genomic | |||||
| Poptr | Populus trichocarpa | Genomic | Phytozome | Genomic | |||||
| Theca | Theobromo cacao | Genomic | Phytozome | Genomic | |||||
| Arath | Arabidopsis thaliana | Genomic | Phytozome | Genomic | |||||
| Carpa | Carica papaya | Genomic | Phytozome | Genomic | |||||
| Vitvi | Vitis vinifera | Genomic | Phytozome | Genomic | |||||
| Solly | Solanum lycopersicum | Genomic | Phytozome | Genomic | |||||
| Aqupu | Aquilegia formosa × pubescens | PlantGDB | Vmatch-PaCE-CAP3 | 19,615 | |||||
| Papso | Papaver somniferum | 1kp + SRA | MIRA-SOAP Trinity | 126,800 | 1,241 | 705.7 | |||
| Aspof | Asparagus officinalis | Leebens-Mack J, unpublished data | Trinity | 120,061 | 1,249 | 747.3 | |||
| Musac | Musa acuminata | Genomic | Global Musa Genomics Consortium | ||||||
| Ambtr | Amborella trichopoda | Genomic | AAGP | MIRA | 208,394 | ||||
Note.—Of the 37 species included in the study, 13 are represented by genomic-derived (CDS) gene models, and the remainder came from transcriptome assemblies: “NGS 1” consisting of assemblies generated using Illumina data from the Thousand Plant Transcriptomes (1KP) Project, “NGS 2” from another contributed Illumina-derived Trinity assembly (Cannon and Belamkar, this study), and “NGS 3” from an Illumina-derived SOAP Denovo assembly (Jiao et al. 2012). Data sources: 1KP-Consortium (2013); Amborella Genome Project (2013); Ancestral Angiosperm Genome Project (2013); NCBI Sequence Read Archive; PlantGDB (http://www.plantgdb.org).