Table 3.
Content statistics for the revision and expansion of bna572.
| bna572 | bna572_revised | bna572+ | |
|---|---|---|---|
| Genes | 558 | 854 | 962a |
| Genes removed | n/a | 37 | 37 |
| Compartment-specific metabolitesb | 579 | 579 | 666 |
| Metabolites (metabolite species) | 376 | 376 | 457 |
| Compartment-specific metabolites | 579 | 579 | 666 |
| Unique KEGG metabolite IDs | 227 | 295 | 371 |
| Unique Chebi metabolite IDs | 0 | 270 | 333 |
| Unique Pubchem metabolite IDs | 0 | 296 | 372 |
| Unique Inchi metabolite annotations | 0 | 252 | 319 |
| Compartments | 11 | 11 | 11 |
| Biomass components | 8 | 8 | 15 |
| Reactions | 572 | 572 | 669a |
| Reactions with associated genes | 367 | 463 | 543 |
| Reactions with “AND” associated genes | 0 | 66 | 66 |
| Unique EC numbers | 216 | 217 | 279 |
| Unique references | 76 | 91 | 98 |
| Unique subsystems | 35 | 84 | 93 |
| Mass imbalanced reactions | 130 | 8 | 9 |
| Charge imbalanced reactions | n/a | 2 | 3 |
| Reactions with a confidence score | 0 | 572 | 669 |
| Reactions with changed stoichiometric constraints | n/a | 6 | 6 |
| Reactions with changed thermodynamic constraints | n/a | 0 | 0 |
| Blocked reactionsc | 0 | 0 | 0 |
a
Does not include 4 genes and 2 reactions added to genotype specific models (see Table 4).
b
Compartmentalized metabolite pools.
c
When there is an exchange reaction for myricetin[c].