Table 2.
Allele Frequencies and Fst Values for BDNF dbSNPs Shared by Mexican Americans and HapMap Samples
SNP | Major/ Minor Allele | Minor Allele Frequency (MAF) | Fst | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Mexican American (MA) | HapMap Sample | |||||||||
Cases | Controls | All | CEU | YRI | HCB+JPT | MA vs CEU | MA vs YRI | MA vs HCB+JPT | ||
rs7124442 | T/C | 0.23 | 0.26 | 0.25 | 0.37 | 0.54 | 0.07 | 0.03 | 0.18 | 0.09 |
rs6265 | G/A | 0.10 | 0.15 | 0.12 | 0.18 | 0.00 | 0.48 | 0.01 | 0.08 | 0.31 |
rs11030101 | A/T | 0.26 | 0.33 | 0.29 | 0.40 | 0.12 | 0.31 | 0.02 | 0.07 | 0.00 |
rs11819808 | C/T | 0.01 | 0.00 | 0.01 | 0.00 | 0.28 | 0.00 | 0.00 | 0.45 | 0.00 |
rs11030102 | C/G | 0.17 | 0.18 | 0.18 | 0.29 | 0.07 | 0.01 | 0.04 | 0.04 | 0.11 |
rs12273539 | C/T | 0.35 | 0.23 | 0.29 | 0.00 | 0.34 | 0.13 | 0.20 | 0.00 | 0.06 |
rs11030104 | A/G | 0.12 | 0.15 | 0.14 | 0.20 | 0.00 | 0.49 | 0.01 | 0.08 | 0.29 |
rs11030109 | G/A | 0.02 | 0.03 | 0.03 | 0.04 | 0.00 | 0.00 | 0.00 | 0.01 | 0.01 |
rs988748 | C/G | 0.15 | 0.16 | 0.15 | 0.22 | 0.05 | 0.49 | 0.01 | 0.04 | 0.25 |
rs4923468 | C/A | 0.01 | 0.02 | 0.02 | 0.02 | 0.19 | 0.02 | 0.00 | 0.26 | 0.00 |
rs10767664 | A/T | 0.14 | 0.16 | 0.15 | 0.20 | 0.04 | 0.49 | 0.00 | 0.04 | 0.26 |
rs7931755 | A/G | 0.01 | 0.01 | 0.01 | 0.00 | 0.25 | 0.00 | 0.00 | 0.41 | 0.00 |
rs2030324 | G/A | 0.37 | 0.41 | 0.39 | 0.57 | 0.55 | 0.56 | 0.06 | 0.05 | 0.05 |
rs12273363 | T/C | 0.15 | 0.16 | 0.16 | 0.19 | 0.07 | 0.01 | 0.00 | 0.03 | 0.09 |
rs908867 | C/T | 0.04 | 0.05 | 0.04 | 0.12 | 0.10 | 0.04 | 0.04 | 0.03 | 0.00 |
rs7931247 | C/T | 0.37 | 0.42 | 0.39 | 0.57 | 0.55 | 0.56 | 0.06 | 0.05 | 0.05 |
rs12288512 | G/A | 0.14 | 0.15 | 0.15 | 0.19 | 0.07 | 0.01 | 0.00 | 0.02 | 0.09 |
rs11030123 | G/A | 0.04 | 0.05 | 0.04 | 0.12 | 0.10 | 0.04 | 0.04 | 0.02 | 0.00 |