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. Author manuscript; available in PMC: 2016 Jan 1.
Published in final edited form as: Aquat Toxicol. 2014 Nov 26;0:192–201. doi: 10.1016/j.aquatox.2014.11.016

Table 2.

AHR2a and AHR2b target regions and oligonucleotides used in ZFN and CRISPR-Cas9-based mutagenesis. The ZFN target site is shown in capital letters. The sequence flanking the target sites are recognized by the ZFN proteins.

Name Description Sequence
AHR2a exon 2 ZFN target site ctgcgcctcagcgtgGGATAcctgagggtcaagag
AHR2a exon 3 ZFN target site gactcattcagcttcTCTGAaggagagctgctgct
AHR2a exon 2 CRISPR-Cas9 target site GGAGCGAATCTCATCAGGGA
AHR2a exon 3 CRISPR-Cas9 target site GGGTGGCTCCTGGAGTCAAC
AHR2b exon2 CRISPR-Cas9 target site GGACCGTCTGAACGGCGAGC
AHR2b exon3 CRISPR-Cas9 target site GGGCGAAGGTCTGAGCGGTC
2-ex3Fwd AHR2a ZFN pair3 screening TGTTTCACCTCCTGCACAGCTTCC
1XRR1 AHR2a ZFN pair3 screening TACTAGCTAAACGTGACCTGTCG
2a-ex3CrF AHR2a CRISPR-Cas exon3 screening CTGTTCTATCAGGTGGAGAGTCC
2a-ex3CrR AHR2a CRISPR-Cas exon3 screening GTTGTTGGATGAGTATGCAGGTGG
AHR2b-CrF AHR2b CRISPR-Cas9 exon2 screening AATCTTTGATCCGGTCTGATCTGG
AHR2b-CrR AHR2b CRISPR-Cas9 exon2 screening AGACACAACCAAGCAGCAACACG
2bex3-Fwd AHR2b CRISPR-Cas9 exon3 screening ATCGCCCAGCCTTAGCTTCCAGTCG
2bex3-Rev AHR2b CRISPR-Cas9 exon3 screening GCGTTTTTGCTTTGTCTGCTGTCGG
Fh2A-ex3-CR1 AHR2a exon3 gRNA oligo1 TAGGGTGGCTCCTGGAGTCAAC
Fh2A-ex3-CR2 AHR2a exon3 gRNA oligo2 AAACGTTGACTCCAGGAGCCAC
FhAHR2b-CR1 AHR2b exon2 gRNA oligo1 TAGGACCGTCTGAACGGCGAGC
FhAHR2b-CR2 AHR2b exon2 gRNA oligo2 AAACGCTCGCCGTTCAGACGGT
Fh2B-ex3-CR1 AHR2b exon3 gRNA oligo1 TAGGGCGAAGGTCTGAGCGGTC
Fh2B-ex3-CR2 AHR2b exon3 gRNA oligo2 AAACGACCGCTCAGACCTTCGC
2b-1aF AHR1a off-target screening GCTTAATCCTGCTTTCGTCTCTGC
Fh1a-ex2rev AHR1a off-target screening AAGAAGTGTTTGGCTCGTAGGTAGC
2b-2aF AHR2a off-target screening TTTTACCCCTCACGGAAGAAGATGG
Fh2a-ex2rev AHR2a off-target screening GTAGCTCTTGACCCTCAGGTATCC
2b-1bF AHR1b off-target screening TTTCCTCCTCTCCAGAGCCAAACC
Fh1b-ex2rev AHR1b off-target screening AAGAAGCTCTTGGTGCGCAGGTAGC
RR-ex2fwd AHRR off-target screening CTCATCCCTTCTGCCGTCTCGTCC
RR-ex2rev AHRR off-target screening AAGAAGCTTTTGACGCGGAGGTAGG