. 2004 Jul;72(7):4172–4187. doi: 10.1128/IAI.72.7.4172-4187.2004

TABLE 5.

Comparative expression of B. pseudomallei strain SZ5028 genes in response to growth in M9 media containing 1.0% l-arabinose or d-glucose from analysis of whole-genome microarrays

Mean log₂(I_Ara/I_Glu)^d	Gene	Common name	Other name
3.660567716	BPSL2188	Isocitrate lyase
2.872528528	BPSS1799	Conserved hypothetical protein
2.396046588	BPSL0638	Putative membrane protein
2.30341532	BPSS1802	Putative membrane protein
2.214457543	BPSL0688	Putative glycerol-3-phosphate dehydrogenase
2.166956925	BPSS0772	MarR family regulatory protein
2.134310112	BPSL0687	Putative glycerol kinase
1.892752921	BPSS1801	Hypothetical transposon protein
1.876541084	BPSS1800	Putative dehydrogenase
1.82906867	BPSS1575	α-Ketoglutarate-dependent taurine dioxygenase
1.709388586	BPSS1485^b	Conserved hypothetical protein
1.704217668	BPSS0310	Hypothetical protein
1.604675546	BPSL3396	ATP synthase beta chain
1.492801878	BPSS0190	Putative O-acetylhomoserine phosphate transport system, substrate binding exported
1.491778582	BPSL1359	Periplasmic protein
1.485378831	BPSS0153	Glutamate-aspartate periplasmic binding protein
1.479761295	BPSS1571	Probable NADH oxidoreductase
1.447509585	BPSS1553^a	Putative membrane protein
1.41337407	BPSS1415	Putative dehydrogenase-oxidoreductase protein
1.334014629	BPSS1417	Putative l-fuculose phosphate aldolase
1.284925131	BPSS0973	Mg²⁺ transport ATPase, P-type 2
1.277778343	BPSL2336	Putative glutamine synthetase
1.274610271	BPSS0031	Putative anaerobic growth regulatory protein
1.256584401	BPSS0257	Putative ribose ABC transport system, substrate binding exported protein
1.255907584	BPSL3401	ATP synthase c chain
1.177272863	BPSL2500	Electron transfer flavoprotein beta-subunit
1.157434208	BPSS0260	Putative kinase
1.131859522	BPSS0885	N-Acylhomoserine lactone synthesis protein
1.084088768	BPSS1572	Permease component of taurine ABC transporter
1.072310657	BPSL1363	Phosphate transport system-related protein
1.065265887	BPSL1362	Phosphate transport system ATP-binding protein
1.053551864	BPSS0519	Conserved hypothetical protein
1.051120355	BPSS0524	Conserved hypothetical protein
1.049706097	BPSS0771	Hypothetical protein
1.038876362	BPSS0977	Putative cytochrome c subunit II
1.012236689	BPSS0316	Putative ACB transport system, membrane protein
0.993355473	BPSL2611	Maltose-binding protein
0.975444214	BPSL2925	Glutamate dehydrogenase
0.973999816	BPSL1489	Putative membrane protein
0.947238343	BPSL2068	Putative two-component system, response regulator
0.939612293	BPSS0259	Putative dehydrogenase
0.928566139	BPSS0329	Putative fatty aldehyde dehydrogenase
0.909462198	BPSS0528	Conserved hypothetical protein
0.905799795	BPSS1638	Putative hydratase
0.898099586	BPSL3104	Conserved hypothetical protein
0.888963775	BPSL3399	ATP synthase delta chain
0.88606119	BPSS0034	Putative fatty aldehyde dehydrogenase
0.875598331	BPSL2970	KDPG/KHG aldolase, putative
0.86945211	BPSL2972	Transcriptional regulator, IclR family
0.83562524	BPSL2967	l-arabinose ABC transporter, ATP-binding protein
0.810672159	BPSL1364	Phosphate regulon two-component system response regulator
0.80527425	BPSL3416	Putative branched-chain amino acid ABC transporter, periplasmic substrate binding protein
0.799179699	BPSS0156	Putative dehydrogenase
0.794669183	BPSL1961	Putative electron transport protein
0.777504798	BPSS0265	Putative porin-related exported protein
0.755403028	BPSS1356	Hypothetical protein
0.750869748	BPSS0526	Hypothetical protein
0.747026223	BPSS0154	d-Amino acid dehydrogenase small subunit
0.743456855	BPSL2028	Putative fimbriae assembly chaperone
0.73331917	BPSL2177	Hypothetical protein
0.711866447	BPSL3021	Cell division protein FtsA
0.695228684	BPSL2024	Putative two-component regulatory system, response regulator
0.668360942	BPSS0308	Putative aminotransferase
0.655842301	BPSS1637	4-Hydroxybutyrate coenzyme A transferase
0.637379273	BPSS0262	Putative aminoglycoside 6′-N-acetyltransferase
0.628790939	BPSS0303	Putative diaminopimelate decarboxylase
0.625501197	BPSS0307	Putative aldehyde dehydrogenase
0.596306364	BPSL2309	Respiratory nitrate reductase alpha chain
0.590151581	BPSL2066	Putative exported protein
0.587354108	BPSL0373	Putative isocitrate dehydrogenase
0.583575109	BPSL2189	Conserved hypothetical protein
0.561185706	BPSL1361	Phosphate transport system permease protein
0.535335317	BPSS1428	Hypothetical protein
0.528600905	BPSS0799	Hypothetical protein
0.502223307	BPSL0415	Zinc-binding dehydrogenase (partial)
0.48860634	BPSL1029	Putative exported outer membrane porin protein
0.451071772	BPSL1345	Putative exported transglycosylase protein
0.447920038	BPSS1911	Putative membrane protein
0.43439967	BPSL1876	Putative phospholipase
0.415997942	BPSS0945	Putative lipoprotein
0.414734465	BPSS0880	Putative transcription elongation factor
0.39974228	BPSL2315	Endonuclease/exonuclease/phosphatase family
0.392807392	BPSL1278	Putative ABC transport system, iron-binding exported protein
0.386719733	BPSL2027	Putative fimbriae-related protein
0.37758332	BPSS0974	Subtilase family protease
0.376154287	BPSL0812	TetR family regulatory protein
0.372701224	BPSL2840	Putative flavohemoglobin like protein
0.369640959	BPSS0944	LysR family regulatory protein
0.350896899	BPSL1904	Putative exported protein
−0.265546681	BPSL2397	Hypothetical protein
−0.375599667	BPSL1062	Translation initiation factor IF-1
−0.385629165	BPSS0648	AraC family regulatory protein
−0.401476867	BPSS2146	Putative LysR family transcriptional regulator
−0.410106054	BPSL2368	Putative membrane protein
−0.418904592	BPSL0600	Hypothetical protein
−0.42521041	BPSL0474	Putative transporter protein
−0.461122926	BPSS1508^b	Hypothetical protein
−0.470627995	BPSL3368	Putative AraC family transcriptional regulator
−0.477031398	BPSL0491	Putative acyl carrier protein
−0.489581077	BPSL2946	C4-dicarboxylate transport protein
−0.500094955	BPSS1867	Putative membrane protein
−0.508615787	BPSL1762	Precorrin-3b C17-methyltransferase
−0.534798524	BPSS1510^b	Putative membrane protein
−0.540333178	BPSL1442	Putative membrane protein
−0.551488165	BPSS1004	Putative acyl transferase
−0.578510311	BPSS1240	Putative penicillin-binding protein
−0.591347751	BPSL1191	Putative exported protein
−0.60912439	BPSL0296	Conserved hypothetical protein
−0.623616771	BPSS1754	Putative membrane protein
−0.62533172	BPSS1535^a	Surface presentation of antigens protein	bsaY
−0.626547891	BPSL1174	Two-component system, sensor kinase protein
−0.634381721	BPSL1170	Putative membrane protein
−0.659601302	BPSS1614^c	Putative type III secretion protein	bpscD2
−0.661862496	BPSS0227	Putative membrane protein
−0.666184002	BPSS1744	Putative cytochrome b₅₆₁
−0.666845101	BPSS1620^c	Putative type III secretion protein	bpscV2
−0.673719979	BPSL2399	Putative glycosyltransferase
−0.679727251	BPSS1811^c	Conserved hypothetical protein	hrpV (TTSS2)
−0.682518126	BPSL2034	Putative hydrolase
−0.684480069	BPSL2540	Putative inner membrane protein
−0.688717244	BPSL2213	Conserved hypothetical protein (pseudogene)
−0.692369046	BPSS0008	Putative TetR family regulatory protein
−0.693886932	BPSS1489^b	Putative exported protein
−0.730982339	BPSS1509^b	Conserved hypothetical protein
−0.7331972	BPSL2322	Putative membrane protein
−0.744510147	BPSS1501^b	Conserved hypothetical protein
−0.766096437	BPSL3310	Flagellar regulon master regulator subunit FlhC
−0.770676455	BPSS1504^b	Putative exported protein
−0.772200497	BPSL1173	Potassium-transporting ATPase c chain
−0.775876851	BPSL2657	Urease gamma subunit
−0.783460065	BPSS2091	Hypothetical protein
−0.796888021	BPSS1117	Conserved hypothetical protein
−0.810417894	BPSS1613^c	Putative type III secretion protein	bpscE2
−0.826702179	BPSL0192	NADP-dependent alcohol dehydrogenase
−0.828794009	BPSS1728	Putative hemolysin activator
−0.852588312	BPSS0692	Fumarylacetoacetate hydrolase family
−0.856506201	BPSL1591	Conserved hypothetical protein
−0.881132891	BPSS1118	Putative HlyD family protein
−0.888650117	BPSL1185	Putative membrane protein
−0.925094352	BPSL2111	Putative LysR-family transcriptional regulator
−0.937413375	BPSL2035	Putative regulatory protein
−0.960146058	BPSS1496^b	Conserved hypothetical protein
−0.984330728	BPSS1550^a	TTSS protein	bsaJ
−0.986561024	BPSS1507^b	Hypothetical protein
−0.996980632	BPSS0966	Putative manganese transport protein
−1.003770427	BPSS1500^b	Conserved hypothetical protein
−1.004140376	BPSS1497^b	Conserved hypothetical protein
−1.006872551	BPSS1896	Ubiquinol oxidase polypeptide I
−1.022502983	BPSS1551^a	TTSS protein	sctKBp3
−1.023479736	BPSS1782	Organic hydroperoxide resistance protein
−1.035169118	BPSL1322	Putative heat shock protein
−1.036142443	BPSL2301	Pyruvate dehydrogenase E1 component
−1.038757904	BPSL3369	Acetaldehyde dehydrogenase
−1.045056203	BPSL0494	LysR family regulatory protein
−1.056941766	BPSL2929	Thermoresistant gluconokinase
−1.071013189	BPSS1612^c	Hypothetical protein	bpscF2
−1.125942579	BPSL2489	50S ribosomal protein L19
−1.12671761	BPSS0752	Putative lipoprotein
−1.135350706	BPSS2051	Putative DNA-binding protein
−1.164923297	BPSL1172	Potassium-transporting ATPase b chain
−1.171472171	BPSS1515^b	Putative transposase (partial)
−1.206749612	BPSL1323	Putative heat shock protein
−1.242957236	BPSS1119	Putative RND efflux transporter
−1.258189419	BPSL2323	Putative exported protein
−1.296885852	BPSL3427	Putative two-component sensor kinase
−1.357746981	BPSS1363	Putative exported protein
−1.36533721	BPSS0910	Conserved hypothetical protein
−1.42123191	BPSS1534^a	Surface presentation of antigens protein	bsaZ
−1.467766735	BPSL1171	Potassium-transporting ATPase a chain
−1.467876647	BPSL0024	LrgA family protein
−1.507840263	BPSS1491^b	Conserved hypothetical protein
−1.558631442	BPSS1503^b	Hypothetical protein
−1.638155545	BPSS1514^b	GTP cyclohydrolase I
−1.653768643	BPSS0289	Putative exported protein
−1.670203034	BPSS1917	Putative crp-family transcriptional regulator
−1.702728184	BPSS0965	Putative oxalate decarboxylase
−1.704025718	BPSS1536^a	Surface presentation of antigens protein	bsaX
−1.725537375	BPSS1748	Hypothetical protein
−1.730257516	BPSS1783	Hypothetical protein
−1.756482379	BPSL0025	Putative membrane protein
−1.818503841	BPSS1513^b	Hypothetical protein
−1.820198806	BPSS1532^d	Putative cell invasion protein	bapB
−1.842067577	BPSS1541^a	Surface presentation of antigens protein	bsaS
−1.917238884	BPSS1519^b	Transposase
−2.04912008	BPSS0514	Acetyl coenzyme A hydrolase/transferase
−2.08878765	BPSS1520^a	Putative AraC-family transcriptional regulator	bprC
−2.136822097	BPSS1498^b	Conserved hypothetical protein
−2.147227432	BPSS1537^a	Surface presentation of antigens protein	bsaW
−2.147273814	BPSS0756	Putative exported protein
−2.209090551	BPSS1543^a	TTSS protein	bsaQ
−2.412295713	BPSS1549^d	TTSS protein	bsaK
−2.447592658	BPSS0753	Hypothetical protein
−2.500150544	BPSS1542^a	Surface presentation of antigens protein	bsaR
−2.772712922	BPSS1526^a	Putative invasion protein	bapC
−2.80293907	BPSS1523^a	Putative chaperone	bicP
−2.868102303	BPSS1545^a	TTSS protein	bsaO
−2.87670536	BPSS1493^a	Hypothetical protein
−2.928005448	BPSS0755	LysR family regulatory protein
−2.99669704	BPSS1547^a	TTSS protein	bsaM
−3.023822001	BPSS1494^b	Putative two-component response regulator
−3.166688057	BPSS1548^a	TTSS protein	bsaL
−3.220777282	BPSS1525^a	Putative G-nucleotide exchange factor	bopE
−3.2758023	BPSS1522^a	Putative two-component response regulator	bprB
−3.330120749	BPSS1546^a	Putative AraC-family regulator of type III secretion system	bsaN
−3.42729804	BPSS1524^a	Putative intercellular spread protein	bopA
−4.034898051	BPSS1521^a	Hypothetical protein
−4.307254378	BPSS1530^a	Putative HNS-like regulatory protein	bprA
−4.349596738	BPSS1529^a	Putative membrane antigen	bipD
−4.43240846	BPSS1533^a	Surface presentation of antigens protein	bicA
−5.391462205	BPSS1516^b	Hypothetical protein
−5.818423748	BPSS1517^b	Hypothetical protein

TTSS3 gene.

Putative TTSS3 additional gene.

TTSS gene.

Mean log₂(I_Ara/I_Glu) = average value of the log₂-based ratio of intensities from two channels of the microarray: growth in arabinose versus growth in glucose.