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. 2015 Jan 19;370(1660):20130624. doi: 10.1098/rstb.2013.0624

Table 1.

Damage in the terminal and penultimate bases (5′ C → T, and the reverse complement 3′ G → A) and median fragment length of libraries from eight extracts (a–h) prepared with non-UDG-treatment (I) and partial UDG-treatment (II). (Damage rates are assessed in all reads as frequencies of C to T substitutions at 5′ ends and G to A substitutions at 3′ ends using MapDamage.)

sample ID UDG treatment reads aligning to mt genome damage rate in terminal position (%) damage rate in penultimate position (%) ratio: terminal : penultimate median length (bp)
a I 15 010 32.74 24.19 1.4 75
II 61 630 10.92 0.46 19.2 59
b I 8054 27.71 20.22 1.4 74
II 81 543 9.30 0.23 40.7 67
c I 57 550 38.50 33.80 1.1 69
II 86 461 6.49 0.32 20.6 52
d I 20 042 26.52 18.90 1.4 70
II 68 761 12.03 0.96 12.5 65
e I 41 624 29.28 22.11 1.3 78
II 5238 10.07 0.66 15.3 61
f I 30 569 27.37 20.46 1.3 74
II 123 598 11.39 0.44 25.7 69
g I 45 264 28.05 20.34 1.4 76
II 104 215 9.21 0.47 19.6 66
h I 27 549 32.44 25.43 1.3 59
II 125 596 7.39 0.85 8.7 53