Table 3.

Percentage identity (below diagonal, italicized) and number of nucleotide differences (above diagonal) for first introns of sequence-cluster genes.

2RA		CPR1	CPR2	CPR3	CPR4	CPR5	CPR6
	CPR1		44	46	44	43	42
	CPR2	32		3	0	42	44
	CPR3	29	95		3	43	44
	CPR4	32	100	95		42	44
	CPR5	34	35	34	35		44
	CPR6	35	32	32	32	32
2RB		CPR1541	CPR115	CPR117	CPR118	CPR119	CPR120	CPR121	CPR122	CPR123
	CPR1541		-	-	-	-	-	-	-	-
	CPR115	-		20	0	2	0	0	46	44
	CPR117	-	72		20	21	20	20	47	50
	CPR118	-	100	72		2	0	0	46	44
	CPR119	-	97	71	97		2	2	45	44
	CPR120	-	100	72	100	97		0	46	44
	CPR121	-	100	72	100	97	100		46	44
	CPR122	-	36	35	36	37	36	36		49
	CPR123	-	39	31	39	39	39	39	32
2LA		CPR17	CPR18	CPR19	CPR20
	CPR17		41	43	38
	CPR18	35		40	40
	CPR19	32	37		35
	CPR20	40	37	44
2LB		CPR136	CPR54	CPR53	CPR52	CPR51	CPR50	CPR49	CPR48	CPR47
	CPR136		31	31	36	32	30	31	32	35
	CPR54	47		0	34	3	1	2	40	40
	CPR53	47	100		34	3	1	2	40	40
	CPR52	39	42	42		36	34	34	32	39
	CPR51	46	95	95	39		4	3	38	40
	CPR50	49	98	98	42	93		3	40	41
	CPR49	47	97	97	42	95	95		38	41
	CPR48	46	32	32	46	36	32	36		42
	CPR47	41	32	32	34	32	31	31	29
2LC2		CPR72	CPR37	CPR66	CPR65	CPR34
	CPR72		37	42	35	45
	CPR37	40		36	40	42
	CPR66	32	42		47	42
	CPR65	44	35	24		42
	CPR34	24	32	32	32
3RA		CPR82	CPR107	CPR83	CPR108	CPR84
	CPR82		39	36	37	40
	CPR107	37		36	37	31
	CPR83	42	42		32	41
	CPR108	40	40	48		40
	CPR84	35	50	34	35
3RB		CPR156	CPR148	CPR86	CPR87	CPR88	CPR89	CPR90	CPR91	CPR149
	CPR156		33	34	35	29	31	34	33	32
	CPR148	42		2	2	27	4	1	2	3
	CPR86	40	96		2	28	6	3	4	5
	CPR87	39	96	96		29	6	3	4	5
	CPR88	49	53	51	49		27	28	29	28
	CPR89	46	93	89	89	53		5	4	1
	CPR90	40	98	95	95	51	91		3	4
	CPR91	42	96	93	93	49	93	95		3
	CPR149	44	95	91	91	51	98	93	95
3RC		CPR92	CPR93	CPR94	CPR109	CPR95	CPR96	CPR97	CPR142	CPR99	CPR100
	CPR92		2	2	10	16	15	10	0	1	11
	CPR93	98		4	10	16	15	11	2	3	13
	CPR94	98	95		11	17	16	10	2	3	11
	CPR109	89	89	87		7	6	15	10	11	16
	CPR95	82	82	80	92		1	11	16	17	12
	CPR96	83	83	82	93	99		10	15	16	11
	CPR97	89	87	89	83	87	89		10	11	3
	CPR142	100	98	98	89	82	83	89		1	11
	CPR99	99	97	97	87	80	82	87	99		12
	CPR100	87	85	87	82	86	87	97	87	86

¹Values not calculated for CPR154 because of N′s in the whole genome sequence

²Excludes intron-less genes.