TABLE 1.

Bacterial sequences from the GenBank database with the highest similarity to each OTU and distribution of OTUs in the rhizosphere of healthy and diseased P. mariana seedlings

OTU	BLAST match	Accession no.	Similarity (%)	% Clonesa
				Healthy	Diseased
01	Neochlamydia hartmannellae	AF177275	96	3
02	Uncultured gammaproteobacterium clone JG36-TzT-191	AJ534626	93	3
03	Parachlamydia acanthamoebae	Y07556	93	3
04	Uncultured Acidobacteria bacterium clone VC47	AY211077	94	3
05	Uncultured bacterium TM7LH15	AF269005	96	3
06	Aquaspirillum autotrophicum	AB074524	99	3
07	Uncultured gammaproteobacterium YNPRH65B	AF465652	99	3
08	Uncultured bacterium clone a13152	AY102338	98	3
09	Uncultured soil bacterium clone C06	AF507679	94	3
10	Uncultured gammaproteobacterium YNPRH65B	AF465652	99	3
11	Uncultured soil bacterium clone C065	AF507697	91	3
12	Bacillus sp.	AF548880	98	3
13	Uncultured Holophaga sp.	AJ536864	96	2
14	Paenibacillus alginolyticus	AB073362	99	2
15	Uncultured candidate division TM7 clone NoosaAW57	AF269013	94	2
16	Sporichthya polymorpha	AB025317	97	2
17	Uncultured bacterium clone CR99-7-30	AF429064	89	2
18	Uncultured bacterium TM7LH20	AF269006	95	2
19	Polyangium sp.	M94280	93	2
20	Uncultured Acidobacteria bacterium isolate OF20	AY177758	98	2
21	Uncultured candidate division BD bacterium clone BDfull1	AF545649	95	1
22	Uncultured Acidobacteriaceae bacterium clone Rs-M39	AB089126	97	1
23	Mycobacterium sp.	AF494537	99	1
24	Oxalobacter formigenes	U49755	93	1
25	Frateuria aurentia	AJ010481	97	1
26	Pseudonocardia chlorethenivorans	AF454510	97	1
27	Microthrix parvicella	X82546	91	1
28	Pseudomonas sp.	AF105381	99	1
29	Uncultured bacterium clone JG30a-KF-32	AJ536876	91	1
30	Uncultured soil bacterium clone C1105	AF507688	95	1
31	Saccharothrix tangerinus	AB020031	99	1
32	Nitrosospira sp.	AF359341	99	1
33	Uncultured bacterium clone CCM6b	AY221067	96	1
34	Oxalobacter formigenes	U49755	93	1
35	Uncultured Rubrobacteridae bacterium 0649-1G9	AF234119	93	2	1
36	Uncultured alphaproteobacterium clone JG34-KF-258	AJ532705	96	2	1
37	Uncultured gammaproteobacterium YNPRH65B	AF465652	98	3	1
38	Unidentified bacterial species clone 32-10	Z95710	97	3	2
39	Uncultured Acidobacteria bacterium isolate OF23	AY177759	97	3	2
40	Uncultured soil bacterium clone C1220	AF507649	96	3	2
41	Parachlamydia acanthamoebae	Y07556	93	2	2
42	Uncultured bacterium DGGEb band YNPRH-B18	AF465676	94	2	2
43	Uncultured Acidobacteria bacterium isolate OF23	AY177759	95	2	2
44	Uncultured soil bacterium clone C1220	AF507649	97	1	1
45	Parachlamydia acanthamoebae	Y07556	92	1	1
46	Parachlamydia acanthamoebae	Y07556	93	1	1
47	Uncultured gammaproteobacterium YNPRH65B	AF465652	95	1	1
48	Uncultured bacterium clone NOS7.157WL	AF432607	97	1	1
49	Parachlamydia acanthamoebae	Y07556	94	1	1
50	Uncultured bacterium DGGE band YNPRH-B18	AF465676	94	1	1
51	Bacterial clone RB30	Z95720	99	1	3
52	Uncultured eubacterium WD260	AJ292673	99	1	3
53	Uncultivated soil bacterium clone S023	AF013550	98	1	2
54	Thiobacillus prosperus	AY034139	90	1	2
55	Uncultured gammaproteobacterium clone JG36-TzT-191	AJ534626	96	1	2
56	Gordonia jacobaea	AF251791	90	1	2
57	Uncultured actinobacterium clone OBPB53	AY193072	90	1	2
58	Uncultured bacterium NoosaAW57	AF269013	95	1	2
59	Conexibacter woesei	AJ440237	97		1
60	Marmoricola aurantiacus	Y18629	96		1
61	Uncultured sludge bacterium S41	AF234734	97		1
62	Unidentified betaproteobacterium	AB006750	94		1
63	Burkholderia glathei	AY154379	99		1
64	Rathayibacter tritici	X77438	98		1
65	Uncultured Verrucomicrobium sp. clone V97	AY143745	97		1
66	Kitasatospora sp.	AB022877	93		1
67	Bacillus benzoevorans	Y14693	98		1
68	Uncultured Acidobacteria bacterium isolate OF20	AY177758	96		1
69	Ammoniphilus oxalaticus	Y14579	99		1
70	Neochlamydia hartmannellae	AF177275	92		1
71	Uncultured actinobacterium ML602J-44	AF486498	93		1
72	Neochlamydia hartmannellae	AF177275	95		2
73	Actinomycete clone Ep T1.148	Z73370	98		2
74	Nitrosospira sp.	AY123805	95		2
75	Uncultured betaproteobacterium clone ccs4	AY133078	95		2
76	Uncultured verrucomicrobium DEV031	AJ401123	94		2
77	Parachlamydia acanthamoebae	Y07556	94		2
78	Uncultured bacterium clone JG30a-KF-32	AJ536876	92		2
79	Nitrosospira sp.	AY123808	94		3
80	Burkholderia sp.	AY134849	99		3
81	Uncultured bacterium clone JG30a-KF-32	AJ536876	91		5
82	Nocardiopsis compostus KS9	AF360734	91		5
83	Uncultured bacterium DGGE band YNPRH-B18	AF465676	94		5
84	Nitrospira sp.	AJ224042	97		5

^aPercentage of clones showing the same OTU from the rhizosphere of healthy or diseased seedlings.

^bDGGE, denaturing gradient gel electrophoresis.