TABLE 2.

Relative abundance of clones with respect to different bacterial and fungal taxa from triplicate soil samples obtained from the rhizosphere of healthy and diseased P. mariana seedlings

Phylogenetic group	Relative bacterial and fungal clone abundance (%)
	rRNA gene library from healthy seedlings				rRNA gene library from diseased seedlings
	Rep Aa	Rep B	Rep C	All	Rep A	Rep B	Rep C	All
Bacteria
Acidobacteria	36	10	31	25	15	13	19	16
Actinobacteria	11	10	9	10	19	22	12	18
Firmicutes		3	9	4			6	2
Proteobacteria	32	38	14	27	8	30	30	22
Alphaproteobacteria			3	1			3	1
Betaproteobacteria	11	13		8	4	15	18	13
Deltaproteobacteria		5		2
Gammaproteobacteria	21	18	11	16	4	15	9	7
Chlamydiae	7	10	11	10	12	19	3	13
Nitrospirae					8	3	3	4
Verrucomicrobia					4		6	3
Candidate division BD	7			2	4			1
Candidate division TM7	4	13	11	10	4		3	2
Environmental clones		10	9	7	22	13	15	17
Unidentified bacteria	4	8	6	6	4		3	2
Fungi
Ascomycota	13	20	28	20	68	48	33	49
Sordariomycetes		20	14	12	32	38	18	29
Dothideomycetes					18	4	9	10
Eurothiomycetes			14	4
Pezizomycetes	13			4
Mitosporic Ascomycota					18	6	6	10
Basidiomycota	87	70	72	76	22	47	53	41
Homobasidiomycetes	87	70	72	76	18	47	47	38
Heterobasidiomycetes					4		6	3
Unidentified fungi		10		4	10	6	15	10

^aRep A, replicate A.