Table 1. Summary of Simulated Rate Constants for the HalM2/His6P-HalA2 Reaction.
kx | best fit ± SE (min–1) | FitSpace boundaries (min–1)b | knet (μM–1 min–1)c | max concn (μM)d | processivity factore |
---|---|---|---|---|---|
kon | 10a | held constant | |||
koff | 18 | held constant | |||
k7→8 | 17 ± 0.8 | 15.1–18.8 | 4.9 | 0.94 | |
k8→9 | 61 ± 3 | 57.1–70.2 | 7.7 | 2.7 | 3.4 |
k9→10 | 25 ± 3 | 15.7–38.4 | 5.8 | 1.3 | 1.4 |
k9→14 | 104 ± 5 | 90.7–117 | 8.5 | 1.3 | 5.8 |
k10→15 | 104 | fixed relative to k9→14 | 8.5 | 0.4 | 5.8 |
k14→15 | 81 ± 4 | 70.3–89.1 | 8.2 | 1.5 | 4.5 |
k15→16 | 36 ± 1.3 | 32.9–40.3 | 6.7 | 3.7 | 2.0 |
k16→17 | 16 ± 0.8 | 13.9–17.6 | 4.7 | 6.2 | 0.89 |
k17→18 | 23 ± 1.7 | 18.5–28.9 | 5.6 | 3.1 | 1.3 |
k16→19 | 2.5 ± 0.26 | 1.88–3.18 | 1.2 | 6.2 | 0.14 |
k17→20 | 5.0 | fixed relative to k16→19 | 2.2 | 3.1 | 0.28 |
k18→21 | 20 ± 1.8 | 16.1–25.2 | 5.3 | 3.3 | 1.1 |
k19→20 | 19 ± 2.7 | 12–29.3 | 5.1 | 0.8 | 1.1 |
k20→21 | 32 ± 1.9 | 26.6–39.5 | 6.4 | 0.8 | 1.8 |
k21→22 | 58 | fixed relative to k20→21 | 7.6 | 1.5 | 3.2 |
k22→4 | 41 | fixed relative to k20→21 | 6.9 | 2.2 | 2.3 |
kon is in units of μM–1 min–1.
FitSpace boundaries are given as 1.12 times the χ2 minimum of the best fit. See Methods for additional details.
knet = (konkx)/(koff + kx). knet is a second-order rate constant that serves as an approximation of kcat/Km.
Refers to the maximum observed concentration of the substrate for the indicated reaction. The total peptide concentration was 40 μM.
Processivity factor is defined as kx/koff