TABLE 2.
Subtype assignments of HIV-1 using three methods on samples obtained from Indian states
| State | Town/city | Distance from state's urban center (km) | Populataion (103) | No. subtype C (non-subtype C or recombinant) by:
|
|||
|---|---|---|---|---|---|---|---|
| C-PCR
|
HMA | Phylogenetic | |||||
| Subtype score | Extra NF-κB | ||||||
| Karnataka | Total | 177 (0) | 24 | 34 (1a) | 32 (1a) | ||
| Bangalore | 0 | 4,461 | 78 | 10 | 16 (1a) | 16 (1a) | |
| Bellary | 301 | 329 | 2 | 0 | 2 | 2 | |
| Bhadravati | 227 | 167 | 4 | 0 | 1 | 0 | |
| Chikamagalore | 251 | 105 | 4 | 2 | 1 | 1 | |
| Coorg | 263 | 33 | 4 | 1 | 0 | 1 | |
| Davanagere | 264 | 378 | 20 | 2 | 3 | 1 | |
| Gulbarga | 663 | 445 | 11 | 0 | 1 | 2 | |
| Hassan | 187 | 122 | 5 | 1 | 1 | 1 | |
| Haveri | 333 | 58 | 6 | 1 | 1 | 2 | |
| Hospet | 289 | 170 | 4 | 1 | 1 | 0 | |
| Kadur | 240 | 32 | 2 | 0 | 0 | 0 | |
| Kanakapura | 78 | 49 | 3 | 1 | 1 | 1 | |
| Kolar | 70 | 118 | 11 | 3 | 3 | 1 | |
| Mandya | 97 | 136 | 4 | 0 | 1 | 0 | |
| Mysore | 139 | 771 | 12 | 2 | 1 | 3 | |
| Raichur | 508 | 214 | 2 | 0 | 0 | 0 | |
| Tumkur | 70 | 258 | 5 | 0 | 1 | 1 | |
| Andhra Pradesh | Total | 14 (1b) | 4 | 5 (1b) | 13 | ||
| Hyderabad | 0 | 3,586 | 4 | 1 | 2 | 3 | |
| Ananthapur | 306 | 229 | 3 (1b) | 2 | 2 (1b) | 3 | |
| Chittoor | 480 | 159 | 1 | 0 | 0 | 1 | |
| Hindupur | 413 | 130 | 1 | 0 | 0 | 1 | |
| Mallapuram | 80 | 1 | 0 | 0 | 1 | ||
| Rayadurg | 327 | 56 | 1 | 0 | 0 | 1 | |
| R.R Dist | 60 | 2,528 | 2 | 1 | 1 | 2 | |
| Warangal | 179 | 550 | 1 | 0 | 0 | 1 | |
| Tamil Nadu | Total | 11 (0) | 1 | 4 | 6 | ||
| Chennai | 0 | 4,382 | 1 | 0 | 0 | 0 | |
| Dharmapuri | 250 | 67 | 3 | 1 | 2 | 1 | |
| Hosur | 266 | 88 | 2 | 0 | 1 | 1 | |
| Kanniyakumari | 659 | 20 | 3 | 0 | 0 | 3 | |
| Krishnagiri | 262 | 68 | 2 | 0 | 1 | 1 | |
| Kerala | Total | 13 (0) | 2 | 3 | 13 | ||
| Thiruvananthapuram | 0 | 775 | 4 | 0 | 1 | 4 | |
| Kayankulam | 123 | 68 | 1 | 1 | 0 | 1 | |
| Kovalam | 15 | 18 | 8 | 1 | 2 | 6 | |
| Vasak | 50 | 4 | 2 | 0 | 0 | 2 | |
| West Bengal | Total | 39 (1c) | 3 | 0 | 0 | ||
| Kolkata | 0 | 4,580 | 39 (1c) | 3 | 0 | 0 | |
| Overall total | 254 (2) | 34 | 46 (2) | 64 (1a) | |||
a
C(LTR)/B(env) recombinant.
b
Subtype B.
c
Subtype A.