TABLE 2.
Nucleotide and amino acid changes within the omp1 sequence in conjunctival samples collected from remote communities in the Australian Northern Territory
| Serovar
|
Nucleotide
|
Amino acid
|
||||||
|---|---|---|---|---|---|---|---|---|
| Type | %a | No.b | No. of changes | Changec | omp1 positiond | No. of changes | Changec | MOMP positione |
| Ba | 12.9 | 2 | 1 | A → G | 511 (VDII) | 1 | S → G | 171 |
| 2 | 2 | A → G | 511 (VDII) | 2 | S → G | 171 | ||
| C → T | 662 (CD) | P → L | 221 | |||||
| C | 87.1 | 26 | 4 | T → C | 569 (CD) | 3 | I → T | 190 |
| A → G | 571 (CD) | N → D | 191 | |||||
| G → A | 972 (VDIV) | Silent | ||||||
| G → T | 1003 (VDIV) | A → S | 335 | |||||
| 1 | 5 | T → C | 569 (CD) | 4 | I → T | 190 | ||
| A → G | 571 (CD) | N → D | 191 | |||||
| A → G | 697 (CD) | N → D | 233 | |||||
| G → A | 972 (VDIV) | Silent | ||||||
| G → T | 1003 (VDIV) | A → S | 335 | |||||
a
Percentage of 31 C. trachomatis PCR-amplified conjunctival samples with the indicated serovar.
b
Number of C. trachomatis samples having the same omp1 sequence changes as those indicated.
c
Nucleotide and amino acid changes from the most phylogenetically related reference strain (i.e., Ba/Apache-2 and C/TW-3/OT).
d
Nucleotide position from the start of the C. trachomatis omp1 gene at which the change was located.
e
Amino acid position from the start of the MOMP at which the deduced change has occurred.