TABLE 3.
Results of SNP assay for the ST-21 clonal complex for 221 isolates from different clonal complexes
| MLST clonal complexa (no. of isolates) | Melting temp (°C) in SNP assay forb:
|
Clonal complex assigned by SNP analysisc | ||
|---|---|---|---|---|
| glnA1 (bp 108) | glnA1 (bp 267) | tkt-1 (bp 330) | ||
| ST-21 (51) | 68 | 68 | 66 | ST-21 |
| ST-257 (29) | 66 | 68 | 60 | NA |
| ST-61 (3) | 62 | 64 | 66, 64 | NA |
| ST-48 (21) | 62, 61 | 64, 68 | 66, 62, 60 | NA |
| ST-45 (28) | 66 | 68 | 66, 64, 60 | NA |
| ST-49 (4) | 68 | 68 | 64, 62 | NA |
| ST-206 (5) | 66, 61 | 68, 64 | 66 | NA |
| ST-22 (7) | 62, 61 | 64 | 66, 64 | NA |
| ST-177 (2) | 66 | 68 | 64, 62 | NA |
| ST-353 (4) | 66, 62 | 68 | 65, 62 | NA |
| ST-42 (10) | 66 | 68 | 64, 62, 60 | NA |
| ST-52 (7) | 62, 61 | 68 | 66, 65, 64 | NA |
| ST-354 (10) | 66, 62 | 68 | 66, 64, 62 | NA |
| ST-403 (4) | 66 | 64 | 64, 62 | NA |
| ST-362 (1) | 66 | 68 | 64, 61 | NA |
| Other clonal complexes and unassigned isolates (35) | ND | ND | ND | NA |
a
Determined by full MLST (3).
b
Bold type indicates the highest melting temperatures.
c
NA, not applicable.