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. 2014 Dec 29;9(12):e116264. doi: 10.1371/journal.pone.0116264

Table 2. Illumina MiSeq sequencing results obtained for Breuil Spruce (BS2010) and Breuil Beech (BB2010) forest soils.

BS2010 GH7 BB2010 GH7 BS2010 GH11 BB2010 GH11 BS2010 AA2 BB2010 AA2
Total no. of sequences 1068 490 6060 1382 1782 553
No. of clusters including singletons 115 38 84 23 102 19
No. of singletons (%) 67 (58%) 26 (68%) 53 (63%) 11 (48%) 60 (59%) 10 (53%)
No. of sequences used in subsamples with (without) singletons 490 (465) 490 (465) 1382 (1372) 1382 (1372) 553 (542) 553 (542)
No. of clusters in subsamples with (without) singletons 83 (41) 38 (13) 40 (24) 23 (13) 49 (39) 19 (9)
Shannon index with (without) singletons 1 3.34 (3.01) 1.87 (1.58) 2.38 (2.27) 1.43 (1.38) 2.83 (2.77) 1.69 (1.59)
Schao1 with (without) singletons 1 251 (44) 103 (13) 82 (31) 41 (13) 82 (48) 64 (9)

Sequence statistics, diversity indexes and richness estimators calculated on subsamples generated from the initial sequence datasets (including singletons) or from datasets without the singletons.

All functional genes encode lignocellulolytic enzymes, i.e. fungal cellulases (GH7), fungal endo-β-1,4-xylanases (GH11), and Basidiomycota class-II peroxidases (AA2).

1

Shannon indexes and Schao1 estimators were calculated using datasets, which contained identical number of sequences for both forest soils.