Table 1.
Probe No. | Probe Name | Hybridization Sequence (20 Nucleotides Adjacent to Ligation Site) |
---|---|---|
1 | CFH exon 1 | TGCTACACAA-ATAGCCCATA |
2 | CFH exon 2 | GGTCTGACCA-AACATATCCA |
3 | CFH exon 3 | TCCTTTTGGT-ACTTTTACCC |
4 | CFH exon 4 | ATTACCGTGA-ATGTGACACA |
5 | CFH exon 6 | AAAGAGGAGA-TGCTGTATGC |
6 | CFH intron 10 | TAGGTAGTCA-TATTTGGAAC |
7 | CFH intron 12 | TGGACACATT-ATGATTGAGT |
8 | CFH exon 13 | AGTTGGACCT-AATTCCGTTC |
9 | CFH exon 18 | GGAACCATTA-ATTCATCCAG |
10 | CFH exon 19 | AGGATGTGTA-TAAGGCGGGG |
11 | CFH intron 20 | GAATTCTATT-TACACTTCCG |
12 | CFH intron 21 | TAATAGGGTA-TATTATTTTC |
13 | CFH intron 22 | GAAAAATCTC-TGTGATGAGT |
14a | CFH exon 23 | AGCTTTATTC-GAGAACAGGT |
15a | CFH intron 23 | TCAATACATA-AATGCACCAA |
16a | CFH intron 23 | CACTTATACA-TGCAATCCGT |
17a | CFH intron 23 | AGTCCGAGGT-AGAAAGGGAC |
18a | CFH intron 23 | GTGGTAATCT-TGGCTCTCAG |
19a | CFHR3 intron 1 | AGGTAAGTTA-AAAGAGATCT |
20a | CFHR3 intron 1 | CATTTTCTTG-TGGAATTACAGC |
21a | CFHR3 intron 3 | CGGACGACAG-TCTCAGACTT |
22a | CFHR3 intron 4 | GGGTTATATG-AATTCCTACA |
23a | CFHR3 exon 6 | TCCCTTCCCG-ACACACTGCTTG |
24a | CFHR1 intron 3 | AGAGTTTCAG-GTCCATGTGT |
25a | CFHR1 intron 5 | AATCTGTGAT-TATTTTGTTA |
26 | CFHR1 exon 6 | CCTGTTCTCA-AATAAAGCTTCT |
27 | CFHR1 exon 6 | TTTTCCAAGT-TTTAATATGG |
28 | CFHR2 intron 1 | TGTCTGTACT-TGGAGTTTCG |
29 | CFHR2 intron 2 | AGATCATAAA-CACTTGATAA |
30 | CFHR2 intron 3 | AATACCTGTG-TGTGGTTTATAG |
31 | CFHR2 exon 4 | ATATGCTCCAGG-TTCATCAGTT |
32 | CFHR5 exon 1 | TGGGTATCCA-CTGTTGGGGG |
33 | CFHR5 exon 2 | TGAAGAAGAT-TATAACCCTT |
34 | CFHR5 exon 3 | CTTCAGGACT-AATACATCTG |
Probes 10–14 were designed within our laboratory. The remaining probes are from the MRC Holland kit (SALSA MLPA P236-A3 ARMD Kit).
Probes spanning the duplication.