Table 1.
Sequences of the oligonucleotide primers used in this study
Pathogen | Target gene | Primers | Final amplicon size (bp) | References | |
---|---|---|---|---|---|
Primer name | Oligonucleotide sequences (5’-3’) | ||||
Anaplasma & Ehrlichia | 16S rRNA | EC9 | TACCTTGTTACGACTT | 1462 | Kawahara et al., 2006 [10] |
EC12A | TGATCCTGGCTCAGAACGAACG | ||||
A. bovis | 16S rRNA | AB1f | CTCGTAGCTTGCTATGAGAAC | 551 | Kawahara et al., 2006 [10] |
AB1r | TCTCCCGGACTCCAGTCTG | ||||
A. phagocytophilum | 16S rRNA | SSAP2f | GCTGAATGTGGGGATAATTTAT | 641 | Kawahara et al., 2006 [10] |
SSAP2r | ATGGCTGCTTCCTTTCGGTTA | ||||
A. marginale | msp4 | Amargmsp4 F | CTGAAGGGGGAGTAATGGG | 344 | Torina et al., 2012 [11] |
Amargmsp4 R | GGTAATAGCTGCCAGAGATTCC | ||||
A. ovis | msp4 | Aovismsp4 F | TGAAGGGAGCGGGGTCATGGG | 347 | Torina et al., 2012 [11] |
Aovismsp4 R | GAGTAATTGCAGCCAGGGACTCT | ||||
Hemoparasite | 18S rRNA | Primer A | AACCTGGTTGATCCTGCCAGT | 1750 | Medlin et al., 1988 [14] |
Primer B | GATCCTTCTGCAGGTTCACCTAC | ||||
Theileria | 18S rRNA | 989 | AGTTTCTGACCTATCAG | 1100 | Allosop et al., 1993 [15] |
990 | TTGCCTTAAACTTCCTTG | ||||
T. luwenshuni | 18S rRNA | Tl310 | GGTAGGGTATTGGCCTACTGA | 340 | Yin et al., 2008 [16] |
Tl680 | TCATCCGGATAATACAAGT | ||||
Babesia | 18S rRNA | Babesia F | TGTCTTGAATACTT(C/G)AGCATGGAA | 950 | Ramos et al., 2010 [17] |
Babesia R | CGACTTCTCCTTTAAGTGATAAC |