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. 2014 Dec 30;9(12):e115856. doi: 10.1371/journal.pone.0115856

Figure 8. Representation of the pocket binding site as detected with the POCASA software.

Figure 8

The shape comes from the gathering of the positions of the POCASA probe sphere explored every 100th ns frame of the 0.5 µs all-atom MD simulation of the µOR structure. The five pockets illustrate the variation of the binding site shape during the simulation.