Table 5. Statistics on the BLASTX, BLASTN and re-mapping of the raw reads to assemblies respectively.

Genotype	Raw reads	Reads mapped	Percent mapped	No. of contigs	Contigs with BLASTX hits	Contigs with BLASTN hits
30076_AByss_Mmer_Dedup	16,774,125	11,287,184	67.29	30,764	87.59	87.56
30076_Trinity_25mer	16,774,125	15,073,698	89.86	31,800	90.70	89.50
30076_Trinity_25mer_Dedup	16,774,125	15,073,380	89.86	29,786	87.32	88.26
38901_AByss_Mmer_Dedup	16,206,929	13,254,030	81.78	32,807	84.14	87.56
38901_Trinity_25mer	16,206,929	14,348,120	88.53	37,379	84.90	91.97
38901_Trinity_25mer_Dedup	16,206,929	14,348,119	88.53	33,145	84.75	90.65
OLin_AByss_Mmer_Dedup	38,335,246	31,592,825	82.41	70,958	65.43	72.48
OLin_Trinity_25mer	38,335,246	33,419,909	87.18	67,098	79.98	88.90
OLin_Trinity_25mer_Dedup	38,335,246	33,567,753	87.56	51,511	78.02	84.72