Table 2.
Phylogenetic affiliations and percentage of similarity between the cloned 16S rRNA gene and its closest relative in the NCBI database using the blast algorithm
| Closest relative in GenBank | No. of clones | Similarity % | Accession number | Bacterial group | |
|---|---|---|---|---|---|
| Clone Library Day 7 | Janthinobacterium sp. HC3-3 | 19 | 97 | JF312973.1 | Betaproteobacteria |
| Pseudomonas sp. BcW159 | 14 | 99 | FJ889609.1 | Gammaproteobacteria | |
| Methylophilus methylothrophus | 13 | 98–99 | AB193724.1 | Betaproteobacteria | |
| Pseudomonas sp. HC2-16 | 9 | 99 | JF312964.1 | Gammaproteobacteria | |
| Stenotrophomas maltophila R551-3 | 8 | 99 | NR_074875.1 | Gammaproteobacteria | |
| Duganella sp. S21012a | 4 | 97–98 | AB495351.1 | Betaproteobacteria | |
| Pseudomonas fluorescence LMG14674 | 4 | 99 | GU198124.1 | Gammaproteobacteria | |
| Acidovorax sp.BSB421 | 1 | 99 | Y18617.1 | Betaproteobacteria | |
| Curvibacter gracilis | 1 | 99 | AB109889.1 | Betaproteobacteria | |
| Dechloromonas sp. SIUL | 1 | 99 | AF170356.1 | Betaproteobacteria | |
| Herbaspirillum sp. PIV.34.1 | 1 | 95 | AJ505863.1 | Betaproteobacteria | |
| Methylotenera mobilis | 1 | 94 | AB698738.1 | Betaproteobacteria | |
| Flavobacterium sp. WB2.1-78 | 1 | 93 | AM167559.1 | Flavobacteria | |
| Pseudomonas sp. BXFJ-8 | 1 | 99 | EU013945.1 | Gammaproteobacteria | |
| Pseudomonas veronni | 1 | 99 | AB334768.1 | Gammaproteobacteria | |
| Clone Library Day 14 | Pseudomonas fluorescens LMG 14674 | 14 | 98–99 | GU198124.1 | Gammaproteobacteria |
| Dechloromonas hortensis MA-1 | 13 | 98–99 | NR_042819.1 | Betaproteobacteria | |
| Methylophilus rhizosphaerae strain 103a | 8 | 98–99 | AB698737.1 | Betaproteobacteria | |
| Methylophilus methylothrophus | 7 | 99 | AB193724.1 | Betaproteobacteria | |
| Curvibacter gracilis strain 7-1 | 4 | 97–98 | NR_028655.1 | Betaproteobacteria | |
| Methylomonas clara strain DSM 6330 | 4 | 96–99 | HF564897.1 | Betaproteobacteria | |
| Janthinobacterium sp. HC3-3 | 2 | 96–99 | JF312973.1 | Betaproteobacteria | |
| Janthinobacterium sp. SON-1402 | 2 | 96–99 | JX196629.1 | Betaproteobacteria | |
| Sphingopyxis sp. BZ3 0 | 2 | 99 | GQ131578.1 | Alphaproteobacteria | |
| Uncultured bacterium clone 1C226551 | 2 | 96 | EU799001.1 | Betaproteobacteria | |
| Uncultured Betaproteobacteria clone AEP-eGFP- | 2 | 99 | FJ511736.1 | Betaproteobacteria | |
| Acinetobacter sp. K7SC-11A | 1 | 99 | JF99965.1 | Gammaproteobacteria | |
| Dechloromonas sp. JD15 | 1 | 100 | JN873345.1 | Betaproteobacteria | |
| Dechloromonas sp. SIUL | 1 | 98 | AF170356.1 | Betaproteobacteria | |
| Methylovorus glucosotrophus strain DSM68 74T | 1 | 95 | FR733702.1 | Betaproteobacteria | |
| Pseudomonas sp. EC3(2012) | 1 | 99 | JX912405.1 | Gammaproteobacteria | |
| Stenotrophomonas sp. Bg23-2 | 1 | 99 | HF548414.1 | Gammaproteobacteria | |
| Uncultured bacterium clone 2M04 | 1 | 99 | EU835430.1 | Betaproteobacteria | |
| Uncultured bacterium clone EDWO7B003-11 | 1 | 96 | HM066437.1 | Betaproteobacteria | |
| Uncultured bacterium cloneMB50-16 | 1 | 97 | JN825265.1 | Betaproteobacteria | |
| Uncultured Methylobacillus clone R15-96 | 1 | 95 | JF808844.1 | Betaproteobacteria | |
| Clone Library Day 28 | Comamonadaceae bacterium ED16 | 23 | 97 | FJ755906.1 | Betaproteobacteria |
| Porphyrobacter sanguineus | 11 | 99 | AB062106.1 | Alphaproteobacteria | |
| Stenotrophomonas maltophilia R551-3 | 6 | 99 | NR_074875.1 | Gammaproteobacteria | |
| Undibacterium sp. C3. | 6 | 96 | JQ417431.1 | Betaproteobacteria | |
| Methylophilus methylothrophus | 4 | 99 | AB193724.1 | Betaproteobacteria | |
| Oxalobacteraceae bacterium CHNTR40 | 4 | 99 | DQ337591.1 | Betaproteobacteria | |
| Pseudomonas sp. BFXJ-8 | 3 | 99 | EU013945.1 | Gammaproteobacteria | |
| Sphingomonas sp. M16 | 3 | 99 | GU086440.1 | Alphaproteobacteria | |
| Undibacterium sp. M4-14 | 3 | 97 | HE616176.1 | Betaproteobacteria | |
| Pseudomonas veronii | 2 | 99 | AB334768.1 | Gammaproteobacteria | |
| Uncultured Nevskia sp. Clone T13M-B4 | 2 | 98 | JN860401.1 | Gammaproteobacteria | |
| Acidovorax sp. isolate G8B1 | 1 | 99 | AJ012071.1 | Betaproteobacteria | |
| Janthinobacterium sp. HC3-3 | 1 | 99 | JF312973.1 | Betaproteobacteria | |
| Janthinobacterium sp. S21124 | 1 | 99 | D84576.2 | Betaproteobacteria | |
| Methylobacterium marchantiae | 1 | 99 | AB698714.1 | Alphaproteobacteria | |
| Methylobacterium sp. Mp3 | 1 | 99 | EF015480.1 | Alphaproteobacteria | |
| Nevskia ramosa | 1 | 98 | AJ001343.1 | Gammaproteobacteria | |
| Nevskia sp. KNF011 | 1 | 99 | AB426555.1 | Gammaproteobacteria | |
| Novosphingobium sp. FND-3 | 1 | 99 | DQ831000.1 | Alphaproteobacteria | |
| Novosphingobium sp. HLT3-9 | 1 | 99 | JX9493761.1 | Alphaproteobacteria | |
| Pseudomonas fluorescens | 1 | 98 | AM410631.1 | Gammaproteobacteria | |
| Pseudomonas putida | 1 | 99 | EU275363.1 | Gammaproteobacteria | |
| Pseudomonas sp. HC2-30 | 1 | 96 | JF312926.1 | Gammaproteobacteria | |
| Sphingomonas sechinoides S32312 | 1 | 99 | AB649019.1 | Alphaproteobacteria | |
| Uncultured Methylophilaceae bacterium | 1 | 98 | HE648207.1 | Betaproteobacteria | |
| Undibacterium parvum | 1 | 98 | AM397629.1 | Betaproteobacteria |