. 2014 Jul 24;23(17):4256–4273. doi: 10.1111/mec.12833

Table 4.

Epilocus-specific methylation states significantly associated with parasite load or identified as F_ST outliers. Each epilocus is listed with size, type of methylation state (U = unmethylated, H = hemimethylated, M = fully methylated), sign of regression coefficient (β₁ for GEE/sam and ρ for bayenv2) and strength of statistical support. Results for bayenv2 are given for separate analyses using either nonmethylated MSAP loci (NML) or a set of 260 neutral SNPs for neutral parameterization

Epilocus (MSAP band)								bayenv2^b
ID	Name	Size	State ID	Type	Coefficient	GEE^a	sam^a	NML	SNP	bayescan^c	mcheza^d
1	MSAP_4.10_01	500	ML201	U	–	**	**	2		***	***
			ML234	H	+		**			***	***
2	MSAP_3.12_05	400	ML189	H	+				2**	***	***
			ML245	U	–					***	***
3	MSAP_3.12_04	450	ML192	M	+			2		***	***
			ML244	U	–			2		***	***
4	MSAP_2.17_02	475	ML238	M	–					***	***
			ML117	U	+	**		3	4
5	MSAP_2.13_10	275	ML159	M	+			3	2		***
6	MSAP_2.13_03	500	ML224	H	–			3	2**		***
			ML220	U	+			3	3***
7	MSAP_2.6_09	300	ML202	H	+	***	**	3	2**	***	**
			ML218	U	–	**	**	3	2		**
8	MSAP_3.16_01	600	ML209	H	+	**	**	3	2		**
			ML128	U	–	**	*
9	MSAP_4.13_04	450	ML207	H	+	**		3			*
10	MSAP_4.10_15	125	ML98	U	–	**	*
			ML194	M	+	**	**	2
11	MSAP_3.16_17	130	ML172	U	–	**	**
12	MSAP_3.12_01	600	ML204	H	+	**	**	4	3**
			ML210	U	–			3	2
13	MSAP_4.13_08	250	ML213	H	+	**	**	2	2
14	MSAP_2.17_14	160	ML228	U	–	**	**
15	MSAP_3.16_07	320	ML272	M	–	**	**	2	2
16	MSAP_4.10_05	390	ML143	U	+	**		2	3
17	MSAP_3.6_09	225	ML100	M	–	*	*
18	MSAP_4.13_06	390	ML284	H	+	*	*	4	3
19	MSAP_3.12_09	320	ML288	M	+	*	*
20	MSAP_4.13_01	600	ML99	U	–	*	*
21	MSAP_4.13_11	150	ML275	H	+		*
22	MSAP_3.12_02	550	ML105	M	+			4	4**
23	MSAP_2.6_01	600	ML107	H	+			4	4*
24	MSAP_3.16_03	500	ML153	U	–			2
			ML262	H	+			2	2**
25	MSAP_3.16_13	200	ML281	M	–			3	3

*: absolute value of coefficient outside 5% / 95% percentiles; **: P ≦ 0.05; ***: q ≦ 0.1.

2: |ρ| ≧ 0.2; 3: |ρ| ≧ 0.3; 4: |ρ| ≧ 0.4; **: Bayes factor ≧ 2; ***: Bayes factor ≧ 3.

***: q ≦ 0.05.

*: P ≧ 0.90; **: P ≧ 0.95; ***: P ≧ 0.99.