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. 2013 Sep 14;23(6):1405–1417. doi: 10.1111/mec.12461

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Copyright © 2014 John Wiley & Sons Ltd

This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

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Fig 1 — Top: Haploweb of ITS sequences of the 68 niphargid samples successfully sequenced for this marker. The two outgroups AH_12.2 (Synurella sp.) and JFF_12.13 (Gammarus sp.) were not included in the alignment, as their sequences were too divergent. The underlying phylogeny was obtained using a maximum-likelihood approach (model: GTR+G+I), following which connections were added between the sequences found co-occurring in heterozygous individuals. Bottom: Haplotree of COI sequences of the 67 amphipods samples successfully sequenced for this marker. The underlying phylogeny was obtained using a maximum-likelihood approach (model: GTR+G+I). Both approaches delineated seven species (represented by different colours); bootstrap values obtained from maximum-likelihood/parsimony/neighbour-joining are shown next to the name of each species.